锯缘青蟹对病原菌感染的急性反应功能蛋白质组

为研究锯缘青蟹对常见重要病原菌的急性反应蛋白质组．将锯缘青蟹随机分为四组．分别注射生理盐水、副溶血弧菌、鳗弧菌和嗜水气单胞菌．继而提取肌肉蛋白进行双向电泳．通过比较各组肌肉蛋白的双向电泳图谱获得三个差异表达的蛋白．对这三个差异蛋白进行肽质量指纹图谱及其生物信息分析．鉴定为Calexeitin、无翅蛋白片断、速激肽相关肽．这些结果对研究锯缘青蟹的抗病蛋白及其机理具有重要意义．     

双重PCR法快速检测欧鳗鲡嗜水气单胞菌

采用已知的嗜水气单胞菌编码溶血素(Hemolysin)和外膜蛋白(Ompts)的基因序列为目的基因,依据其保守序列设计两对相应引物,用双重PCR方法检测了32株从发病欧鳗鲡分离的细菌,将检测结果与试剂盒快速生化鉴定结果进行比较.以嗜水气单胞菌为阳性对照,以大肠杆菌、枯草芽胞杆菌、铜绿假单胞菌、鳗弧菌、溶壁微球菌、金黄色葡萄球菌为阴性对照检测了嗜水气单胞菌溶血素与外膜蛋白基因的特异性.结果表明:被检测的32株欧鳗鲡致病菌中,检测到的4株既有溶血素基因又有外膜蛋白基因的细菌,其生化鉴定结果全部为嗜水气单胞菌,而仅具有外膜蛋白基因的13株细菌中只有5株生化鉴定结果为嗜水气单胞菌.证明双重PCR法可用于快速检测部分嗜水气单胞菌.     

中华鳖抗嗜水气单胞菌亚单位疫苗的制备与应用

水体条件致病菌嗜水气单胞菌对中华鳖养殖业的危害巨大.为预防嗜水气单胞菌的感染,提高中华鳖免疫抵抗力,研究开发嗜水气单胞菌疫苗是一种有效的方法.利用PCR手段克隆获得嗜水气单胞菌DnaK和DnaJ两个基因,并将两基因重组到大肠杆菌表达载体上,转化至大肠杆菌表达菌株,纯化获得了重组蛋白rDnaKAh和rDnaJAh.将两个重组蛋白分别与弗氏佐剂充分混合制备成疫苗,腹腔注射中华鳖幼鳖,加强免疫一次后,用已分离获得的致病菌株感染中华鳖幼鳖,实验结果表明rDnaK具有81.8％的免疫保护效应,而rDnaJ仅具有31.8％的免疫保护效应.     

运用SELEX技术筛选嗜水气单胞菌适配子

以嗜水气单胞菌为研究对象,采用适体筛选技术(SELEX,system evolution of ligands by expo-nential enrichment),利用体外合成的长度为78个核苷酸的随机ssDNA文库,以嗜水气单胞菌为靶目标进行12轮的筛选,利用生物素-抗地高辛碱性磷酸酶显色系统检测DNA适配子与嗜水气单胞菌的亲和力.研究结果表明:随着筛选轮数的增加,DNA适配子与嗜水气单胞菌结合后显色,A(absorbance)值逐渐增加,亲和力由最初的0.32升到第9轮的0.72.研究已初步筛选到与嗜水气单胞菌具有高亲和力的DNA适配子,为嗜水气单胞菌的二级结构研究及其检测试剂盒的研发提供了基础.     

嗜水气单胞菌毒力与毒力基因分布的相关性

采用PCR扩增的方法对9株鱼源嗜水气单胞菌AEROM ONAS HYDROPHILA中的气溶素基因(AERA)、溶血素基因(HLYA)和丝氨酸蛋白酶基因(AHPA)进行了扩增。结果表明,6/9的A.HYDROPHILA中存在AERA基因,8/9的A.HYDROPHILA中存在HLYA基因,而在7/9的A.HYDROPHILA中检测到AHPA基因。通过比较基因检测的结果与嗜水气单胞菌对鲫鱼的致病性,发现AHPA阴性菌株是无毒株,强毒株都呈AERA HLYA AHPA 基因型。AERA HLYA AHPA 基因型是致病性嗜水气单胞菌主要的基因型。本研究首次发现AHPA阳性的嗜水气单胞菌皆为毒力菌株,并且发现AERA和AHPA基因存在相关性,探讨了嗜水气单胞菌致病性与毒力基因分布的关系。     

嗜水气单胞菌与其拮抗菌R-15的生长曲线研究

嗜水气单胞菌的拮抗菌R-15经鉴定为粘质沙雷氏(Serratia marcescens Bizic).研究嗜水气单胞菌及其拮抗菌的生长曲线以及R-15菌与嗜水气单胞菌混合培养的生长曲线,分析拮抗菌R-15培养时间与其产拮抗活性物的关系,并对发酵液中拮抗活性物作初步分离.结果表明,拮抗菌R-15液体培养在20 h时菌体数量达最高,抑菌作用在36 h时最强;当两种菌混合培养至24 h后,嗜水气单胞菌数量从4.5×1017/mL开始快速下降至62 h的2.6×107/mL,而拮抗菌R-15仍维持较高水平.拮抗活性物质初步确定不是蛋白类物质.     

鳗鲡病原性气单胞菌AFLP分型研究

以32株从养殖鳗鲡分离的病原性气单胞菌为试验材料,采用Biolog自动菌鉴系统对其进行生理生化鉴定,结果表明,有20株被鉴定为嗜水气单胞菌,7株被鉴定为威隆气单胞菌,1株为豚鼠气单胞菌,其余4株未能鉴定到种.为进一步确定20株嗜水气单胞菌和7株威隆气单胞菌的基因型,筛选了2对引物(E-C/M-C,E-C/M-A)分别对这两个菌种进行了AFLP分析.结果表明:20株嗜水气单胞菌中共检测到88个位点,均为多态性位点;7株威隆气单胞菌中共检测到61个位点,其中60个为多态性位点.经UPGMA聚类分析表明:20株嗜水气单胞菌可初步分为3种类型,每种类型之间平均遗传距离为0.449,同一类型内不同菌株的平均遗传距离为0.127;7株威隆气单胞菌可初步分为4种类型,每种类型之间平均遗传距离为0.467,变异范围为0.415～0.525.该结果为鱼类病原菌的DNA分型研究提供了参考.     

广西斑点叉尾鮰源嗜水气单胞菌灭活疫苗的制备

本研究针对广西地区分离到的致病性嗜水气单胞菌,开发区域定制化的灭活疫苗,以实现鱼病的有效预防和控制。首先,对斑点叉尾鮰源嗜水气单胞菌在LB培养基中的生长曲线,培养基的最适pH值,以及培养基中添加蔗糖对嗜水气单胞菌生长影响进行研究;随后探索嗜水气单胞菌灭活疫苗的制备方法,并在细胞水平和斑点叉尾鮰活体水平上研究疫苗的安全性,开展疫苗对斑点叉尾鮰的免疫保护实验。结果表明嗜水气单胞菌浓度与菌液OD值间具有较好的线性关系,其回归方程为y=2E-10x+0.1399,R2=0.975 4。用于培养嗜水气单胞菌的LB培养基最适pH值为7.0～7.5,且在培养基中添加蔗糖能显著促进嗜水气单胞菌的生长。研究制备的嗜水气单胞菌灭活疫苗在细胞水平和鱼活体水平均安全无毒,且对斑点叉尾鮰的免疫保护率可达到75%。据此,本研究初步建立起广西斑点叉尾鮰源嗜水气单胞菌灭活疫苗的制备工艺。     

基于AhsA蛋白的嗜水气单胞菌特异性抗体的制备与鉴定

选取嗜水气单胞菌表面特异性抗原蛋白AhsA,构建了pET-28a(+)-AhsA表达载体,并在大肠杆菌BL21中进行表达,利用Ni-NTA亲和层析、凝胶过滤层析等蛋白纯化方法进行纯化。重组蛋白表达效果较好,浓度可达10 mg·mL^-1,纯度可达90%以上,符合制备多克隆抗体的免疫原标准。利用Western Blot技术将AhsA抗体特定识别免疫原蛋白,结果表明该抗体能够特异性识别免疫原蛋白AhsA,而对于牛血清蛋白却不能发生免疫应答,表明该抗体具有一定的特异性且AhsA蛋白具有很好的免疫原性。同时通过检测验证了AhsA蛋白抗体能够特异性检测嗜水气单胞菌,将为水产品质量控制及临床检测嗜水气单胞菌可提供新的技术。     

XapR蛋白在嗜水气单胞菌抗生素耐药性的功能

研究嗜水气单胞菌（Aeromonas hydrophila） LysR型转录调节因子中XapR蛋白抗生素耐药的调控机制。通过测定嗜水气单胞菌ATCC 7966（野生型菌株）与嗜水气单胞菌ATCC 7966 xapR基因缺失株（ΔxapR）对34种抗生素的最低抑菌浓度,系统地评价xapR基因抗生素耐药性;进一步利用定量蛋白质组学技术,探讨xapR参与嗜水气单胞菌调控的生物过程。结果表明：xapR基因缺失后细菌对头孢孟多的耐药性减弱;xapR基因可调控细菌碳代谢、TCA循环等多种代谢途径,此外还与外膜蛋白、TonB、ABC转运系统等抗性基因的表达密切相关。综上,XapR蛋白可通过调节细菌中心代谢途径以及多个抗性基因改变嗜水气单胞菌的耐药性。     

Characterization of Ordovician carbonate reservoirs, southeastern Saskatchewan, Canada

The discovery of the prolific Ordovician Red River reservoirs in 1995 in southeastern Saskatchewan was the catalyst for extensive exploration activity which resulted in the discovery of more than 15 new Red River pools. The best yields of Red River production to date have been from dolomite reservoirs. Understanding the processes of dolomitization is, therefore, crucial for the prediction of the connectivity, spatial distribution and heterogeneity of dolomite reservoirs.The Red River reservoirs in the Midale area consist of 3～4 thin dolomitized zones, with a total thickness of about 20 m, which occur at the top of the Yeoman Formation. Two types of replacement dolomite were recognized in the Red River reservoir: dolomitized burrow infills and dolomitized host matrix. The spatial distribution of dolomite suggests that burrowing organisms played an important role in facilitating the fluid flow in the backfilled sediments. This resulted in penecontemporaneous dolomitization of burrow infills by normal seawater. The dolomite in the host matrix is interpreted as having occurred at shallow burial by evaporitic seawater during precipitation of Lake Almar anhydrite that immediately overlies the Yeoman Formation. However, the low δ18O values of dolomited burrow infills (-5.9‰～ -7.8‰, PDB) and matrix dolomites (-6.6‰～ -8.1‰, avg. -7.4‰ PDB) compared to the estimated values for the late Ordovician marine dolomite could be attributed to modification and alteration of dolomite at higher temperatures during deeper burial, which could also be responsible for its 87Sr/86Sr ratios (0.7084～0.7088) that are higher than suggested for the late Ordovician seawaters (0.7078～0.7080). The trace amounts of saddle dolomite cement in the Red River carbonates are probably related to "cannibalization" of earlier replacement dolomite during the chemical compaction.     

An Index mechanism for multi-scale view in spatial databases

There are numerous geometric objects stored in the spatial databases. An importance function in a spatial database is that users can browse the geometric objects as a map efficiently. Thus the spatial database should display the geometric objects users concern about swiftly onto the display window. This process includes two operations:retrieve data from database and then draw them onto screen. Accordingly, to improve the efficiency, we should try to reduce time of both retrieving object and displaying them. The former can be achieved with the aid of spatial index such as R-tree, the latter require to simplify the objects. Simplification means that objects are shown with sufficient but not with unnecessary detail which depend on the scale of browse. So the major problem is how to retrieve data at different detail level efficiently. This paper introduces the implementation of a multi-scale index in the spatial database SISP (Spatial Information Shared Platform) which is generalized from R-tree. The difference between the generalization and the R-tree lies on two facets: One is that every node and geometric object in the generalization is assigned with a importance value which denote the importance of them, and every vertex in the objects are assigned with a importance value,too. The importance value can be use to decide which data should be retrieve from disk in a query. The other difference is that geometric objects in the generalization are divided into one or more sub-blocks, and vertexes are total ordered by their importance value. With the help of the generalized R-tree, one can easily retrieve data at different detail levels.Some experiments are performed on real-life data to evaluate the performance of solutions that separately use normal spatial index and multi-scale spatial index. The results show that the solution using multi-scale index in SISP is satisfying.     

A computer generator for randomly layered structures

AcomputergeneratorforrandomlylayeredstructuresYUJia shun1,2,HEZhen hua2(1.TheInstituteofGeologicalandNuclearSciences,NewZealand;2.StateKeyLaboratoryofOilandGasReservoirGeologyandExploitation,ChengduUniversityofTechnology,China)Abstract:Analgorithmisintrod…     

海南岛地体及其毗邻陆缘晚中生代—新生代古地磁研究和构造演化

本文叙述了对海南岛及其毗邻大陆边缘白垩纪到第四纪地层岩石进行古地磁研究的全部工作过程。通过分析岩石中剩余磁矢量的磁偏角及磁倾角的变化,提出海南岛白垩纪以来经历的构造演化模式如下:早期伴随顺时针旋转而向南迁移,后期伴随逆时针转动并向北运移。联系该地区及邻区的地质、地球物理资料,对海南岛上述的构造地体运动提出以下认识:北部湾内早期有一拉张作用,主要是该作用使湾内地壳显著伸长减薄,形成北部湾盆地。从而导致了海南岛的早期构造运动,而海南岛后期的构造运动则主要是受南海海底扩张的影响。海南地体运动规律的阐明对于了解北部湾油气盆地的形成演化有重要的理论和实际意义。     

Exciton Seebeck in Molecular Systems

Various applications relevant to the exciton dynamics,such as the organic solar cell,the large-area organic light-emitting diodes and the thermoelectricity,are operating under temperature gradient.The potential abnormal behavior of the exicton dynamics driven by the temperature difference may affect the efficiency and performance of the corresponding devices.In the above situations,the exciton dynamics under temperature difference is mixed with     

Achieving Unusual States of Matter Under High Pressure

The elongation method,originally proposed by Imamura was further developed for many years in our group.As a method towards O(N)with high efficiency and high accuracy for any dimensional systems.This treatment designed for one-dimensional(ID)polymers is now available for three-dimensional(3D)systems,but geometry optimization is now possible only for 1D-systems.As an approach toward post-Hartree-Fock,it was also extended to     

《Chinese Science Bulletin》SUBJECT INDEX TO VOLUME 59(2014)

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An on-line scaling method for improving scalability of a database cluster

The explosive growth of the Internet and database applications has driven database to be more scalable and available, and able to support on-line scaling without interrupting service. To support more client's queries without downtime and degrading the response time, more nodes have to be scaled up while the database is running. This paper presents the overview of scalable and available database that satisfies the above characteristics. And we propose a novel on-line scaling method. Our method improves the existing on-line scaling method for fast response time and higher throughputs. Our proposed method reduces unnecessary network use, i.e. , we decrease the number of data copy by reusing the backup data. Also, our on-line scaling operation can be processed parallel by selecting adequate nodes as new node. Our performance study shows that our method results in significant reduction in data copy time.     

An improved R-tree based on childnode''s probability

R-Tree is a good structure for spatial searching. But in this indexing structure,either the sequence of nodes in the same level or sequence of traveling these nodes when queries are made is random. Since the possibility that the object appears in different MBR which have the same parents node is different, if we make the subnode who has the most possibility be traveled first, the time cost will be decreased in most of the cases. In some case, the possibility of a point belong to a rectangle will shows direct proportion with the size of the rectangle. But this conclusion is based on an assumption that the objects are symmetrically distributing in the area and this assumption is not always coming into existence. Now we found a more direct parameter to scale the possibility and made a little change on the structure of R-tree, to increase the possibility of founding the satisfying answer in the front sub trees. We names this structure probability based arranged R-tree (PBAR-tree).     

Integrating GIS Web services based on mediating architecture

The geographic information service is enabled by the advancements in general Web service technology and the focused efforts of the OGC in defining XML-based Web GIS service. Based on these models, this paper addresses the issue of services chaining,the process of combining or pipelining results from several interoperable GIS Web Services to create a customized solution. This paper presents a mediated chaining architecture in which a specific service takes responsibility for performing the process that describes a service chain. We designed the Spatial Information Process Language (SIPL) for dynamic modeling and describing the service chain, also a prototype of the Spatial Information Process Execution Engine (SIPEE) is implemented for executing processes written in SIPL. Discussion of measures to improve the functionality and performance of such system will be included.