应用酵母双杂交系统筛选与NAP1相互作用的蛋白质

用NAP1作为"诱饵"蛋白,通过酵母双杂交系统筛选人淋巴细胞cDNA文库,鉴定阳性克隆;再利用酵母双杂交和免疫共沉淀验证相互作用. 结果表明,通过酵母双杂交系统筛选人淋巴细胞cDNA文库,阳性克隆的鉴定,发现了与NAP1的相互作用蛋白质―蛋白酶体α亚基3(PSMA3). 免疫共沉淀(Co-IP)结果证实外源表达的NAP1蛋白和PSMA3蛋白在293T细胞中有特异性的相互作用. NAP1作为FDC分泌的一种多肽,与PSMA3有特异性的相互作用,这种相互作用如何实现对蛋白酶体降解靶蛋白的活性调节,其作用机理有待深入研究.     

酵母双杂交系统筛选与HCMV pUL23蛋白相互作用的蛋白质

将UL23基因的ORF序列克隆到酵母表达载体pGBKT7构建诱饵质粒pGBKT7-UL23,用酵母双杂交技术筛选人胚肾cDNA文库中与人巨细胞病毒pUL23相互作用的宿主蛋白分子,再通过回复酵母双杂交再次确认两者之间的相互作用.结果表明:酵母双杂交,回复酵母双杂交试验证明宿主蛋白分子elF3e(eukaryotic trans-lation initiation factor 3,subunit E interacting protein)能够与人巨细胞病毒UL23蛋白相互作用.宿主蛋白分子elF3e能够与人巨细胞病毒UL23蛋白相互作用,这为进一步研究pUL23蛋白在HCMV生活周期中的作用机制提供依据.     

卡波氏肉瘤相关疱疹病毒ORF50结合蛋白的筛选

应用酵母双杂交系统,以包含RTA氮端530个氨基酸的片段插入载体pGBKT7作为诱铒,在人脾脏cDNA文库中,筛选得到4个阳性AD/文库质粒,并用酵母双杂交实验验证了阳性AD/文库质粒与RTA的相互作用.将阳性AD/文库质粒测序并对测序结果做BLAST分析,发现它们分别是:TLE2、RBP-Jk、ZNF-12和WHSC1.     

人白细胞介素24蛋白酵母双杂交诱饵载体的构建及其自激活检测

构建人白细胞介素24蛋白酵母双杂交诱饵栽体,并检测其自激活作用.采用PCR技术特异性扩增人白细胞介素24基因IL-24,将其克隆入酵母双杂交诱饵质粒pGBKT7中,通过PCR扩增、限制性酶切鉴定及序列测定,获得质粒pGBKT7-IL-24.采用PEG/LiAc法将其转入酵母AH109中,经表型筛选检测其自激活作用,同时...     

番茄的酵母双杂交cDNA文库构建与评价

生物胁迫和非生物胁迫是番茄栽培种植过程中的主要不利因素,严重影响番茄生长发育、产量和品质.为研究番茄在生物胁迫和非生物胁迫下的蛋白互作机制,以测序番茄品种"HeinZ1706"为试验材料,采用重组方式连接,构建了在干旱胁迫、 TMV病毒和辣椒疫霉菌侵染的番茄酵母双杂交cDNA文库.结果显示构建的酵母cDNA文库的滴度为1.15×10~7 CFU/mL,插入的cDNA片段平均长度约为1 kb,重组率为100%.进一步地,以在细胞核质定位的辣椒疫霉菌RxLR效应蛋白PcAvr3a11为诱饵,利用此酵母双杂交cDNA文库成功筛选得到25个来自番茄的不同候选互作蛋白.     

利用酵母双杂交系统筛选IrrE相互作用蛋白

本研究通过酵母双杂交技术,构建了IrrE蛋白为诱饵载体,从拟南芥cDNA文库中筛选与IrrE诱饵蛋白相互作用的功能蛋白.研究结果表明,在所获得的阳性克隆中,发现了一个与拟南芥基因At1g01470所编码的蛋白有较高同源性的蛋白,即LEA14蛋白（晚期胚胎发育富集蛋白）,同源性高达98%.推测IrrE转录因子在提高植物耐盐性的过程中起了重要作用.     

ABA受体RCAR1/PYL9相互作用蛋白质的筛选及初步研究

使用拟南芥作为模型,采用酵母双杂交系统筛选出和ABA受体RCAR1/PYL9有相互作用的蛋白质,以更深入的研究RCAR1/PYL9的功能.首先利用反转录PCR方法获得拟南芥的cDNA,然后通过酵母双杂交系统,用拟南芥RCAR1/PYL9作为诱饵蛋白对拟南芥cDNA文库进行筛选,并获得多个阳性克隆.对该菌落进行进一步的鉴定得到与RCAR1/PYL9具有相互作用的蛋白质,这对进一步研究RCAR1/PYL9及其相互作用蛋白质在ABA信号转导途径中的作用及地位奠定了基础.     

应用酵母双杂交技术筛选与p53相互作用的蛋白质

应用酵母双杂交技术筛选与p53发生相互作用的蛋白质,有助于进一步阐明其在肿瘤发生、发展中发挥重要作用的调控机制。采用酵母双杂交技术,以p53C末端（62-393aa）作为诱饵筛选人乳腺cDNA文库,寻找能与之相互作用的蛋白质．并运用报告基因等实验提供的信息,经过重复验证排除假阳性以确定最后的阳性克隆。以p53C末端（62～393aa）作为诱饵最终筛选出了一个阳性克隆,经测序及生物信息学分析,这一个阳性克隆为：PIAS3（Protein inhibitor of activated stat3）。说明了PIAS3蛋白能与p53（62-393aa）发生特异性的相互作用。     

烟草尼古丁去甲基酶基因CYP82E4启动子结合蛋白的鉴定与分析

 以尼古丁去甲基酶编码基因（CYP82E4）上游的启动子功能元件作为诱饵,使用酵母单杂交方法从喷施乙烯利叶片的cDNA融合表达文库中钓取与之相互作用的结合蛋白.研究结果表明,诱饵载体pHIS2/pE4和cDNA融合表达载体pGADT7-Rec2共转化到酵母细胞中的效率为1×10⁶.对文库的筛选结果表明,本研究共获得39个阳性克隆,且阳性克隆的插入片段在850～2500bp之间.将获得的39个阳性克隆进行测序,其中发现1个可能参与基因(CYP82E4）表达调控的锌指蛋白转录因子.下一步将对其功能进行分析,为通过分子育种手段培养低含量去甲基尼古丁的烟草提供实验基础.     

无形体分泌蛋白Ats-1与宿主细胞互作蛋白筛选及其生物信息分析

目的筛选与无形体Ats-1互作的THP-1宿主细胞蛋白,为揭示病原体侵袭宿主的致病机理提供科学数据。方法利用分子克隆法构建p GBKT7-ats-1诱饵质粒并转化酵母Y2HGold,验证诱饵质粒是否有自激活、毒性现象;制备THP-1细胞c DNA并连接到p GADT7-Rec上,转化酵母Y187并鉴定c DNA文库质量;酵母双杂交筛选与Ats-1互作的宿主细胞靶蛋白,通过GO、String生物信息分析细胞靶蛋白可能的生物学过程。结果成功构建诱饵质粒;cDNA文库容量4×10~6克隆,插入片段100～3 000 bp,且无污染,达到建库质控要求;酵母双杂交结果显示,与Ats-1蛋白互作的宿主细胞靶蛋白7个,分别是真核延伸因子1复合体α1亚基(EEF1A1)、TIMP金属蛋白酶抑制子1(TIMP1)、锌指蛋白36,C3H样2 (ZFP36L2)、半乳糖凝集素1(LGALS1)、前胸腺素α(PTMA)、WBSCR22、吸引素(ATRN)。生物信息分析显示,与Ats-1互作的宿主靶蛋白主要参与细胞分化增殖、细胞凋亡、自噬、炎症等生物学过程。结论病原诱饵蛋白与宿主细胞靶蛋白互作是一种细胞-细胞间发生信号联系的分子水平生物学过程,可能影响病原粘附、侵袭及胞内生存,最终导致疾病发生及临床症状出现。     

Characterization of Ordovician carbonate reservoirs, southeastern Saskatchewan, Canada

The discovery of the prolific Ordovician Red River reservoirs in 1995 in southeastern Saskatchewan was the catalyst for extensive exploration activity which resulted in the discovery of more than 15 new Red River pools. The best yields of Red River production to date have been from dolomite reservoirs. Understanding the processes of dolomitization is, therefore, crucial for the prediction of the connectivity, spatial distribution and heterogeneity of dolomite reservoirs.The Red River reservoirs in the Midale area consist of 3～4 thin dolomitized zones, with a total thickness of about 20 m, which occur at the top of the Yeoman Formation. Two types of replacement dolomite were recognized in the Red River reservoir: dolomitized burrow infills and dolomitized host matrix. The spatial distribution of dolomite suggests that burrowing organisms played an important role in facilitating the fluid flow in the backfilled sediments. This resulted in penecontemporaneous dolomitization of burrow infills by normal seawater. The dolomite in the host matrix is interpreted as having occurred at shallow burial by evaporitic seawater during precipitation of Lake Almar anhydrite that immediately overlies the Yeoman Formation. However, the low δ18O values of dolomited burrow infills (-5.9‰～ -7.8‰, PDB) and matrix dolomites (-6.6‰～ -8.1‰, avg. -7.4‰ PDB) compared to the estimated values for the late Ordovician marine dolomite could be attributed to modification and alteration of dolomite at higher temperatures during deeper burial, which could also be responsible for its 87Sr/86Sr ratios (0.7084～0.7088) that are higher than suggested for the late Ordovician seawaters (0.7078～0.7080). The trace amounts of saddle dolomite cement in the Red River carbonates are probably related to "cannibalization" of earlier replacement dolomite during the chemical compaction.     

A computer generator for randomly layered structures

AcomputergeneratorforrandomlylayeredstructuresYUJia shun1,2,HEZhen hua2(1.TheInstituteofGeologicalandNuclearSciences,NewZealand;2.StateKeyLaboratoryofOilandGasReservoirGeologyandExploitation,ChengduUniversityofTechnology,China)Abstract:Analgorithmisintrod…     

海南岛地体及其毗邻陆缘晚中生代—新生代古地磁研究和构造演化

本文叙述了对海南岛及其毗邻大陆边缘白垩纪到第四纪地层岩石进行古地磁研究的全部工作过程。通过分析岩石中剩余磁矢量的磁偏角及磁倾角的变化,提出海南岛白垩纪以来经历的构造演化模式如下:早期伴随顺时针旋转而向南迁移,后期伴随逆时针转动并向北运移。联系该地区及邻区的地质、地球物理资料,对海南岛上述的构造地体运动提出以下认识:北部湾内早期有一拉张作用,主要是该作用使湾内地壳显著伸长减薄,形成北部湾盆地。从而导致了海南岛的早期构造运动,而海南岛后期的构造运动则主要是受南海海底扩张的影响。海南地体运动规律的阐明对于了解北部湾油气盆地的形成演化有重要的理论和实际意义。     

Exciton Seebeck in Molecular Systems

Various applications relevant to the exciton dynamics,such as the organic solar cell,the large-area organic light-emitting diodes and the thermoelectricity,are operating under temperature gradient.The potential abnormal behavior of the exicton dynamics driven by the temperature difference may affect the efficiency and performance of the corresponding devices.In the above situations,the exciton dynamics under temperature difference is mixed with     

Achieving Unusual States of Matter Under High Pressure

The elongation method,originally proposed by Imamura was further developed for many years in our group.As a method towards O(N)with high efficiency and high accuracy for any dimensional systems.This treatment designed for one-dimensional(ID)polymers is now available for three-dimensional(3D)systems,but geometry optimization is now possible only for 1D-systems.As an approach toward post-Hartree-Fock,it was also extended to     

《Chinese Science Bulletin》SUBJECT INDEX TO VOLUME 59(2014)

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An on-line scaling method for improving scalability of a database cluster

The explosive growth of the Internet and database applications has driven database to be more scalable and available, and able to support on-line scaling without interrupting service. To support more client's queries without downtime and degrading the response time, more nodes have to be scaled up while the database is running. This paper presents the overview of scalable and available database that satisfies the above characteristics. And we propose a novel on-line scaling method. Our method improves the existing on-line scaling method for fast response time and higher throughputs. Our proposed method reduces unnecessary network use, i.e. , we decrease the number of data copy by reusing the backup data. Also, our on-line scaling operation can be processed parallel by selecting adequate nodes as new node. Our performance study shows that our method results in significant reduction in data copy time.     

An improved R-tree based on childnode''s probability

R-Tree is a good structure for spatial searching. But in this indexing structure,either the sequence of nodes in the same level or sequence of traveling these nodes when queries are made is random. Since the possibility that the object appears in different MBR which have the same parents node is different, if we make the subnode who has the most possibility be traveled first, the time cost will be decreased in most of the cases. In some case, the possibility of a point belong to a rectangle will shows direct proportion with the size of the rectangle. But this conclusion is based on an assumption that the objects are symmetrically distributing in the area and this assumption is not always coming into existence. Now we found a more direct parameter to scale the possibility and made a little change on the structure of R-tree, to increase the possibility of founding the satisfying answer in the front sub trees. We names this structure probability based arranged R-tree (PBAR-tree).     

An Index mechanism for multi-scale view in spatial databases

There are numerous geometric objects stored in the spatial databases. An importance function in a spatial database is that users can browse the geometric objects as a map efficiently. Thus the spatial database should display the geometric objects users concern about swiftly onto the display window. This process includes two operations:retrieve data from database and then draw them onto screen. Accordingly, to improve the efficiency, we should try to reduce time of both retrieving object and displaying them. The former can be achieved with the aid of spatial index such as R-tree, the latter require to simplify the objects. Simplification means that objects are shown with sufficient but not with unnecessary detail which depend on the scale of browse. So the major problem is how to retrieve data at different detail level efficiently. This paper introduces the implementation of a multi-scale index in the spatial database SISP (Spatial Information Shared Platform) which is generalized from R-tree. The difference between the generalization and the R-tree lies on two facets: One is that every node and geometric object in the generalization is assigned with a importance value which denote the importance of them, and every vertex in the objects are assigned with a importance value,too. The importance value can be use to decide which data should be retrieve from disk in a query. The other difference is that geometric objects in the generalization are divided into one or more sub-blocks, and vertexes are total ordered by their importance value. With the help of the generalized R-tree, one can easily retrieve data at different detail levels.Some experiments are performed on real-life data to evaluate the performance of solutions that separately use normal spatial index and multi-scale spatial index. The results show that the solution using multi-scale index in SISP is satisfying.     

Integrating GIS Web services based on mediating architecture

The geographic information service is enabled by the advancements in general Web service technology and the focused efforts of the OGC in defining XML-based Web GIS service. Based on these models, this paper addresses the issue of services chaining,the process of combining or pipelining results from several interoperable GIS Web Services to create a customized solution. This paper presents a mediated chaining architecture in which a specific service takes responsibility for performing the process that describes a service chain. We designed the Spatial Information Process Language (SIPL) for dynamic modeling and describing the service chain, also a prototype of the Spatial Information Process Execution Engine (SIPEE) is implemented for executing processes written in SIPL. Discussion of measures to improve the functionality and performance of such system will be included.