A NEW DESCRIPA NEW DESCRIPTOR OF AMINO ACIDS BASED ON THE THREEDIMENSIONAL VECTOR OF ATOMIC INTERACTION FIELD

QUANTITATIVE STRUCTURE ACTIVITY RELATIONSHIP (QSAR) IS A VERY IMPORTANT TOPIC FOR MANY SCIENTIFIC FIELDS AND CAN BE TERMED AS QUANTITATIVE SEQUENCE ACTIVITY MODELS(QSAM)[1] WHEN REFERRED TO THE RESEARCH ON RELATION- SHIPS BETWEEN STRUCTURES AND ACTIVITIES OF BIOLOGICAL MOLECULES, SUCH AS PROTEINS, AND NUCLEIC ACIDS. HOW- EVER, IT IS VERY DIFFICULT TO ESTABLISH A QSAM MODEL,…     

Pharmacological versus binding analysis of receptor systems: How do they interplay? Myometrial cell receptors for oxytocin as a paradigm

Summary Binding studies in various biological systems frequently indicate the presence of several binding sites for a biologically active ligand. They differ in their affinity for the ligand in question, binding capacity, and Hill coefficient, which suggests differences in the mechanisms of the binding site-ligand interactions. Identification of the true receptors (sites initiating a cellular response) appears to be difficult. Three clusters of binding sites for oxytocin were found on rat myometrial cells. The oxytocin receptor seems to be linked to the medium-affinity site; the cooperation between the high-and medium-affinity sites in eliciting the uterotonic response seems likely, but lacks experimental proof. Dose-response analysis in partially irreversibly inhibited uterus preparations, the method of equipotent doses (Furchgott-Bursztyn method), and structure-activity analysis of oxytocin-like peptides acting as competitive inhibitors of oxytocin, turned out to be suitable for pharmacological analysis of this receptor system.     

三酮类化合物的电子结构与活性关系的研究

采用量子化学半经验的AMl方法计算了三酮类化合物的电子结构，用分子中原子的静电荷，分子的前沿轨道能级探讨了该类化合物的构效关系，从理论上解释了三酮类化合物的生物活性。     

苯衍生物急性毒性与分子结构的定量相关研究

苯衍生物是一类重要的有机污染物之一,研究苯衍生物的毒性与分子结构之间的关系具有重要意义.用Dragon计算了69个苯衍生物的一系列分子结构参数,通过逐步回归分析,选择了醇/水分配系数(MlogP)、Balaban指数(Jhete)、Barysz矩阵特征值之和(SEigZ)及指示变量(I)等4个结构参数对苯衍生物致呆鲦鱼的急性毒性(-logLC50)建立多元线性回归模型,得到R=0.997 7,s=0.30;交叉验证结果为Rcv=0.909 0,scv=0.33.与文献结果比较,建立的QSAR模型所用参数少,建模方法简单,物理意义明确,且模型性能优于文献报道结果.     

黑米色素苷化学结构与抗氧化活性的关系

锦葵素、天竺葵-3，5-二葡萄糖苷、矢车菊素-3-葡萄糖苷和矢车菊素-3，5-二葡萄糖苷具有很高的抗氧化活性，是黑米抗氧化作用的主要成分．4种分子中B-4’-OH是强活性基，B-3’OH、A-5、7-OH是增效基，因其具有增效基的数目和位置不同，其抗氧化活性表现出了一定的差异．     

α-唑基-α-芳氧烷基频哪酮(芳乙酮)及其醇式衍生物抗真菌活性的支持向量机研究

采用支持向量机（SVM）算法，将其用于α-唑基-α-芳氧基频哪酮（芳乙酮）及其醇式衍生物抗真菌活性的研究．讨论了该类化合物的量子化学参数、计算核函数及参数的选择和优化问题，建立了抗真菌活性预测的数学模型，结果表明支持向量机可用于该类化合物抗真菌活性的筛选和构效关系（QSAR）的研究．     

基于3种建模法的食源性 ACE抑制二肽 QSAR 研究

以自组建的食源性血管紧张素转化酶（angiotensin I‐converting enzyme ,ACE）抑制二肽为研究样本,采用氨基酸描述子VHSE（principal component score vector of hydrophilicity ,steric ,and electronic properties）对ACE抑制二肽进行表征后,比较偏最小二乘（partial least square regression ,PLS）、支持向量机（support vector machine ,SVM）及主成分分析（principal component analysis ,PCA）‐SVM相结合的3种建模方法对ACE抑制二肽的QSAR（quantitative structure‐activity relationship）建模。结果显示,对于食源性ACE抑制二肽,3个模型的拟合能力无明显差异,SVM模型的预测能力略强;对其进行权重投影分析发现,C末端氨基酸较N末端氨基酸对其活性的影响更为明显。     

新型杀虫晶体蛋白Cry7Ab4空间结构的计算机解析

采用一级结构分析,二级结构预测及同源比对建模的方法,模拟出新型杀虫晶体蛋白Cry7Ab4的空间结构,并进行动力学优化.结合其杀大猿叶甲活性数据与蛋白结构比对分析,发现Cry7Ab4与Cry7Aa1的活性差异主要归因于α3,α4上疏水性氨基酸的不同.     

A novel comparative molecule/pseudo receptor interaction analysis

Quantitative structure-activity relationship (QSAR) becomes an important tool in the modern basic chemis- try. In the 1960s, Hansch et al.[1] proposed Hansch- Fujita method to express the relationships between ac- tivities and parameters. Free et al.[2] d…