Germline-specific dgcr8 knockout in zebrafish using a BACK approach

Zebrafish is an important model to study developmental biology and human diseases. However, an effective approach to achieve spatial and temporal gene knockout in zebrafish has not been well established. In this study, we have developed a new approach, namely bacterial artificial chromosome-rescue-based knockout (BACK), to achieve conditional gene knockout in zebrafish using the Cre/loxP system. We have successfully deleted the DiGeorge syndrome critical region gene 8 (dgcr8) in zebrafish germ line and demonstrated that the maternal-zygotic dgcr8 (MZdgcr8) embryos exhibit MZdicer-like phenotypes with morphological defects which could be rescued by miR-430, indicating that canonical microRNAs play critical role in early development. Our findings establish that Cre/loxP-mediated tissue-specific gene knockout could be achieved using this BACK strategy and that canonical microRNAs play important roles in early embryonic development in zebrafish.     

Regional assessment of wadable streams in Idaho, USA

There has been a resurgence in applying bioassessment techniques for evaluating and monitoring the biological integrity of stream ecosystms. In all cases biological metrics have been refined to account for regional variation in aquatic habitats and fauna. This study evaluated environmental and macroinvertebrate properties for wadable streams in 3 major ecoregions of Idaho: Northern Basin and Range, Snake River Plain, and Northern Rocky Mountain. These 3 ecoregions constitute > 80% of the land area in Idaho. Reference streams were delineated from test streams in each ecoregion using standard habitat assessment protocols. (Plafkin et al. 1989). Multiple discriminant analysis effectively determined habitat (quantified measures) and macroinvertebrate differences between reference and test streams within ecoregions, although the results suggested that quantifiable habitat measures (e.g., water chemistry and nutrients) and biotic measures based on taxonomic groups (e.g., % Elmidae) improved the discriminatory power of evaluation procedures. Our results support the contention of a multi-metric approach for assessing differences among streams within an ecoregion. Lastly, individual metrics differed in their importance for evaluating stream condition among ecoregions, further emphasizing the importance of regionally stratifying metric selection or scoring procedures.     

Factors affecting selection of winter food and roosting resources by porcupines in Utah

Ecological and phytochemical factors potentially affecting winter dietary discrimination by porcupines ( Erethizon dorsatum ) in the mountain brush zone of Utah were studied. Porcupines utilized gambel oak ( Quercus gambelii ) as their primary winter food and roosting resource. Big-tooth maple ( Acer grandidentatum ) was the most common tree species in the study area but was rarely utilized by porcupines. Conifer species were used as a food and roosting resource significantly less often than they occurred in the study area, despite thermal advantages provided by their relatively dense canopies. Oak feed trees were successfully separated from conifer feed trees by discriminant analysis 100% of the time. Oak trees were correctly classified as feed and nonfeed trees 71% of the time. Gambel oak contained higher amounts of crude protein, fiber, and tannins, but was lower in either extract fractions and fatty acid content than conifers. A layer of adipose tissue used as an energy reserve by porcupines may have relaxed energy intake demands sufficiently to permit them to concentrate on a diet of oak tissue, which is high in protein, rather than a high-fat conifer diet. A diet relatively high in protein may have facilitated digestion of food material high in fiber. Temperature did not affect selection of tree species for roosting. Rock and snow caves were utilized infrequently and the study population ranged widely. Three of 15 study animals were eaten by predators.     

The Janus kinase family of protein tyrosine kinases and their role in signaling

In the early 1990s, the search for protein kinases led to the discovery of a novel family of non-receptor tyrosine kinases, the Janus kinases or JAKs. These proteins were unusual because they contained two kinase homology domains and no other known signaling modules. It soon became clear that these were not ‘just another’ type of kinase. Their ability to complement mutant cells insensitive to interferons and to be activated by a variety of cytokines demonstrated their central signaling function. Now, as we approach the end of the decade, it is evident from biochemical studies to knockout mice that JAKs play non-redundant functions in development, differentiation, and host defense mechanisms. Here, recent progress is reviewed, with particular emphasis on structure-function studies aimed at revealing how this family of tyrosine kinases is regulated.     

热预处理对细胞分裂效率的影响

以发酵酵母为研究对象，采用超声波空蚀和高压均质方法对细胞进行机械细胞分裂，研究了热预处理对微生物细胞分裂效率的作用。结果表明：酵母悬浮液的温度经热预处理从室温（22±1）℃上升到40-50℃时，达到相同程度的细胞分裂效率所需的能量降低了；当酵母悬浮液的温度经热预处理上升到50℃时，蛋白质浓度达到最大值，蛋白质发生变质的热预处理温度≥52℃。     

地球内核的地震波速各向异性与其自转有关

地球内核相对于外部地球存在差异的转动，固体内核表面相对于液态外核运动的线速度在赤道上最大，在两极为零，因此内核生长速度在赤道附近比两极处快，引力作用将驱动某内部的物质内赤道向两极流动使其保持近似球形，与这一流动相应的轴对称应力场使得六方紧密堆积（ｈｃＰ）铁晶体的ｃ轴沿内核自转轴方向排列，导致地震波速度各向异性。     

The coiled-coil domain containing protein CCDC40 is essential for motile cilia function and left-right axis formation

Primary ciliary dyskinesia (PCD) is a genetically heterogeneous autosomal recessive disorder characterized by recurrent infections of the respiratory tract associated with the abnormal function of motile cilia. Approximately half of individuals with PCD also have alterations in the left-right organization of their internal organ positioning, including situs inversus and situs ambiguous (Kartagener's syndrome). Here, we identify an uncharacterized coiled-coil domain containing a protein, CCDC40, essential for correct left-right patterning in mouse, zebrafish and human. In mouse and zebrafish, Ccdc40 is expressed in tissues that contain motile cilia, and mutations in Ccdc40 result in cilia with reduced ranges of motility. We further show that CCDC40 mutations in humans result in a variant of PCD characterized by misplacement of the central pair of microtubules and defective assembly of inner dynein arms and dynein regulatory complexes. CCDC40 localizes to motile cilia and the apical cytoplasm and is required for axonemal recruitment of CCDC39, disruption of which underlies a similar variant of PCD.     

Arthropod and plant communities as indicators of land rehabilitation effectiveness in a semiarid shrubsteppe

We describe a case study evaluating the ecological impact of Bromus tectorum L. (cheatgrass) invasion following fire disturbance and the effectiveness of revegetation as a means of rehabilitation in a degraded semiarid shrubsteppe system. The effectiveness of rehabilitation efforts was assessed relative to arthropod richness, vegetation and arthropod community composition, and ground-cover characteristics in 3 habitats: undisturbed, burned and weed infested ( B. tectorum ), and burned then rehabilitated with native and nonnative vegetation. Arthropods were collected in each habitat using pitfall traps. Differences in arthropod richness were compared using rarefaction curves. Nonmetric multidimensional scaling and nonparametric multivariate statistical procedures, including analysis of similarity and similarity percentage routines, were used to compare arthropod and vegetation community composition and ground-cover characteristics between habitats. Arthropod communities in the rehabilitated habitat were distinct from those observed in the undisturbed and weed-infested habitats. Rehabilitation in this study resulted in a shift toward conditions observed in an undisturbed habitat and perhaps is an intermediate step to complete restoration. Arthropod richness, arthropod and vegetation community composition, and ground-cover characteristics were all useful indicators but returned slightly different results. Assessing multiple variables yielded the most complete understanding of the habitats studied.     

Diets of young Colorado squawfish and other small fish in backwaters of the Green River, Colorado and Utah

We compared diet of young-of-year Colorado squawfish ( Ptychocheilus lucius ), an endangered cyprinid, with diets of other fish Rhinichthys osculus, Catostomus discobolus, and C. latipinnts , and nonnative Cyprinella lutrensis, Notropis stramineus, Pimephales promelas, Ictalurus punctatus, and Lepomis cyanellus. For each species, diet varied with size and between upper and lower river reaches but not between seasons for fish of similar size. Larval chironomids and ccratopogonids were principal foods of most fishes. Copepods and cladocerans were important in diets of P. lucius L. cyanellus Catostomus discobolus was the only species that ate moderate amounts of algae. Fish (all larvae) were in digestive tracts of only 10 P. lucius (21-73 mm TL), about 1% of P. lucius analyzed. High diet overlap occurred between some size-reach groups of P. lucius and C. lutrensis, R. osculus, C. latipinnis, I. punctatus, and L. cyanellus . Potential for food competition between young-of-year P. lucius and other fishes in backwaters appeared greatest with the very abundant C. lutrensis .