Capybaras (Rodentia: Cavidae) in highlands: environmental variables related to distribution,and herbivory effects on a common plant species

The capybara Hydrochoerus hydrochaeris is one of the largest and most widely distributed herbivores in the Neotropical lowlands. However, as yet, there are no records of its occurrence in highland environments. Our aim was to evaluate the environmental variables related to the capybara’s distribution and monitor the effects of its herbivory on the individuals and on the reproductive phenology of A. polyanthus, a common and important plant species of the high-altitude grasslands. Our results show that capybaras frequently occur in the high-altitude grasslands along the Campo Belo River, but they avoid waterlogged areas, occurring more frequently on the dry rocky areas. Capybara herbivory affected the number of A. polyanthus rosettes in flower, leading to the presence of inflorescence formation anomalies. High-altitude grasslands apparently provide capybaras with the three main components (food, shelter and water) required for their occurrence. However, although they seem to present a seasonal feeding strategy, which also happens in lowlands, their avoidance of the waterlogged areas suggests that in highlands the species may present different environmental preferences from those presented in lowlands. In addition, the impact of capybaras’ herbivory on A. polyanthus individuals indicates the potential impact that capybaras can represent on the plant community of the high-altitude grasslands. This appears to be a great opportunity to study the effect of the arrival of a large herbivore in a new environment and possible impacts on plant assemblages.     

Probabilistic transitions for P systems

In this paper we use the abstract syntax and the structural operational semantics of the P systems given in [ 1 ], and add probabilities to the rules and to the communication targets. We take into account the number of possible combinations of rules which can be applied in a computation step, as well as the consumption degree of the current resources.     

多晶材料的微铣削建模与实验研究

对微铣削多晶材料的加工机理进行了详细分析,建立了相应的加工过程模型.重点考虑了最小切屑厚度和材料金相组织的作用,并对微铣削力和加工表面生成的影响因素进行了细致分析.分析发现多晶材料不同的晶粒特性会导致生成表面产生波动,并致使切削力产生附加振动.最小切屑厚度将决定刀具对晶粒是否进行材料去除,并使切削过程产生高频波动.大量的实验研究表明,模型准确地预测了微铣削现象,对优化加工参数、提高生产效率和加工质量提供了理论基础.     

Etude de l'hemocyanine d'un Crustacé décapodeCarcinus maenas Linné par dichroïsme circulaire naturel et dichroïsme circulaire magnétique

Summary The hemocyanin ofCarcinus maenas L. in the oxy, deoxy and apoforms is examined by CD and MCD. An interpretation of the results is given in relation to the problems raised by Cu–O² bond. The ration tyrosin/tryptophan is determined by treatment of spectra by computer.     

A second generation human haplotype map of over 3.1 million SNPs

We describe the Phase II HapMap, which characterizes over 3.1 million human single nucleotide polymorphisms (SNPs) genotyped in 270 individuals from four geographically diverse populations and includes 25-35% of common SNP variation in the populations surveyed. The map is estimated to capture untyped common variation with an average maximum r2 of between 0.9 and 0.96 depending on population. We demonstrate that the current generation of commercial genome-wide genotyping products captures common Phase II SNPs with an average maximum r2 of up to 0.8 in African and up to 0.95 in non-African populations, and that potential gains in power in association studies can be obtained through imputation. These data also reveal novel aspects of the structure of linkage disequilibrium. We show that 10-30% of pairs of individuals within a population share at least one region of extended genetic identity arising from recent ancestry and that up to 1% of all common variants are untaggable, primarily because they lie within recombination hotspots. We show that recombination rates vary systematically around genes and between genes of different function. Finally, we demonstrate increased differentiation at non-synonymous, compared to synonymous, SNPs, resulting from systematic differences in the strength or efficacy of natural selection between populations.     

Observed increase in local cooling effect of deforestation at higher latitudes

Deforestation in mid- to high latitudes is hypothesized to have the potential to cool the Earth's surface by altering biophysical processes. In climate models of continental-scale land clearing, the cooling is triggered by increases in surface albedo and is reinforced by a land albedo-sea ice feedback. This feedback is crucial in the model predictions; without it other biophysical processes may overwhelm the albedo effect to generate warming instead. Ongoing land-use activities, such as land management for climate mitigation, are occurring at local scales (hectares) presumably too small to generate the feedback, and it is not known whether the intrinsic biophysical mechanism on its own can change the surface temperature in a consistent manner. Nor has the effect of deforestation on climate been demonstrated over large areas from direct observations. Here we show that surface air temperature is lower in open land than in nearby forested land. The effect is 0.85 ± 0.44 K (mean ± one standard deviation) northwards of 45° N and 0.21 ± 0.53 K southwards. Below 35° N there is weak evidence that deforestation leads to warming. Results are based on comparisons of temperature at forested eddy covariance towers in the USA and Canada and, as a proxy for small areas of cleared land, nearby surface weather stations. Night-time temperature changes unrelated to changes in surface albedo are an important contributor to the overall cooling effect. The observed latitudinal dependence is consistent with theoretical expectation of changes in energy loss from convection and radiation across latitudes in both the daytime and night-time phase of the diurnal cycle, the latter of which remains uncertain in climate models.     

Quantitative reactivity profiling predicts functional cysteines in proteomes

Cysteine is the most intrinsically nucleophilic amino acid in proteins, where its reactivity is tuned to perform diverse biochemical functions. The absence of a consensus sequence that defines functional cysteines in proteins has hindered their discovery and characterization. Here we describe a proteomics method to profile quantitatively the intrinsic reactivity of cysteine residues en masse directly in native biological systems. Hyper-reactivity was a rare feature among cysteines and it was found to specify a wide range of activities, including nucleophilic and reductive catalysis and sites of oxidative modification. Hyper-reactive cysteines were identified in several proteins of uncharacterized function, including a residue conserved across eukaryotic phylogeny that we show is required for yeast viability and is involved in iron-sulphur protein biogenesis. We also demonstrate that quantitative reactivity profiling can form the basis for screening and functional assignment of cysteines in computationally designed proteins, where it discriminated catalytically active from inactive cysteine hydrolase designs.     

SLAC1 is required for plant guard cell S-type anion channel function in stomatal signalling

Stomatal pores, formed by two surrounding guard cells in the epidermis of plant leaves, allow influx of atmospheric carbon dioxide in exchange for transpirational water loss. Stomata also restrict the entry of ozone--an important air pollutant that has an increasingly negative impact on crop yields, and thus global carbon fixation and climate change. The aperture of stomatal pores is regulated by the transport of osmotically active ions and metabolites across guard cell membranes. Despite the vital role of guard cells in controlling plant water loss, ozone sensitivity and CO2 supply, the genes encoding some of the main regulators of stomatal movements remain unknown. It has been proposed that guard cell anion channels function as important regulators of stomatal closure and are essential in mediating stomatal responses to physiological and stress stimuli. However, the genes encoding membrane proteins that mediate guard cell anion efflux have not yet been identified. Here we report the mapping and characterization of an ozone-sensitive Arabidopsis thaliana mutant, slac1. We show that SLAC1 (SLOW ANION CHANNEL-ASSOCIATED 1) is preferentially expressed in guard cells and encodes a distant homologue of fungal and bacterial dicarboxylate/malic acid transport proteins. The plasma membrane protein SLAC1 is essential for stomatal closure in response to CO2, abscisic acid, ozone, light/dark transitions, humidity change, calcium ions, hydrogen peroxide and nitric oxide. Mutations in SLAC1 impair slow (S-type) anion channel currents that are activated by cytosolic Ca2+ and abscisic acid, but do not affect rapid (R-type) anion channel currents or Ca2+ channel function. A low homology of SLAC1 to bacterial and fungal organic acid transport proteins, and the permeability of S-type anion channels to malate suggest a vital role for SLAC1 in the function of S-type anion channels.