Signaling mechanisms of neurite outgrowth induced by the cell adhesion molecules NCAM and N-Cadherin

Formation of appropriate neural circuits depends on a complex interplay between extracellular guiding cues and intracellular signaling events that result in alterations of cytoskeletal dynamics and a neurite growth response. Surface-expressed cell adhesion molecules (CAMs) interact with the surroundings via the extracellular domain and bind to the cytoskeleton via their intracellular domain. In addition, several CAMs induce signaling events via direct interactions with intracellular proteins or via interactions with cell surface receptors. Thus, CAMs are obvious candidates for transmitting extracellular guidance cues to intracellular events and thereby regulating neurite outgrowth. In this review, we focus on two CAMs, the neural cell adhesion molecule (NCAM) and N-cadherin, and their ability to mediate signaling associated with a neurite outgrowth response. In particular, we will focus on direct interaction between NCAM and N-cadherin with a number of intracellular partners, as well as on their interaction with the fibroblast growth factor receptor (FGFR). Received 23 May 2008; received after revision 14 July 2008; accepted 21 July 2008     

High-resolution (1.5 A) crystal structure of phospholipase C from Bacillus cereus

Both the phosphatidylinositol-hydrolysing and the phosphatidylcholine-hydrolysing phospholipases C have been implicated in the generation of second messengers in mammalian cells. The phosphatidylcholine-hydrolysing phospholipase C (PLC) from Bacillus cereus, a monomeric protein containing 245 amino-acid residues, is similar to some of the corresponding mammalian proteins. This, together with the fact that the bacterial enzyme can mimic the action of mammalian PLC in causing, for example, enhanced prostaglandin biosynthesis, suggests that B. cereus PLC can be used as a model for the hitherto poorly characterized mammalian PLCs. We report here the three-dimensional structure of B. cereus PLC at 1.5 A resolution. The enzyme is an all-helix protein belonging to a novel structural class and contains, at least in the crystalline state, three Zn2+ in the active site. We also present preliminary results from a study at 1.9 A resolution of the complex between PLC and inorganic phosphate (Pi) which indicate that the substrate binds directly to the metal ions.     

Environmental factors in relation to the salt content of Salicornia pacifica var. utahensis

The stability of the salt content in Salicornia pacifica Standl. var. utahensis (Tidestrom) Munz in relation to environmental changes was investigated. Salicornia pacifica communities have a characteristic soil pH of 7.5 to 8.0 ± 0.2 and a constant subsurface soil moisture level of 25 to 35 percent. The ion content in the tissue of S. pacifica remained constant despite increased moisture stress throughout the growing season. The concentrations of the salts were significantly higher in the surface soil layers than in the subsurface layers around the roots. Normal metabolic processes in the tissues of S. pacifica appear to occur even though some fluctuations in the ionic balance and concentration of ions in the plant occur.     

Resequencing of 200 human exomes identifies an excess of low-frequency non-synonymous coding variants

Targeted capture combined with massively parallel exome sequencing is a promising approach to identify genetic variants implicated in human traits. We report exome sequencing of 200 individuals from Denmark with targeted capture of 18,654 coding genes and sequence coverage of each individual exome at an average depth of 12-fold. On average, about 95% of the target regions were covered by at least one read. We identified 121,870 SNPs in the sample population, including 53,081 coding SNPs (cSNPs). Using a statistical method for SNP calling and an estimation of allelic frequencies based on our population data, we derived the allele frequency spectrum of cSNPs with a minor allele frequency greater than 0.02. We identified a 1.8-fold excess of deleterious, non-syonomyous cSNPs over synonymous cSNPs in the low-frequency range (minor allele frequencies between 2% and 5%). This excess was more pronounced for X-linked SNPs, suggesting that deleterious substitutions are primarily recessive.     

Burrowing Owl foods in Conata Basin, South Dakota

Burrowing Owls ( Athene cunicularia ) were studied in a prairie dog town of southwestern South Dakota. Pellets regurgitated by Burrowing Owls contained a wide variety of prey remains. Insects, spiders, small mammals, and vegetation were the most frequent items identified in the pellets. Mammals were consumed most frequently during spring and early summer. Insects were consumed in large numbers during the entire period of this study, but they became more frequent in owl pellets during late summer and fall in association with a decline of mammal remains. Some prey items observed around owl nest sites were not found in the pellets examined. Possible secondary poisoning of some prey of Burrowing Owls has not produced any change in owl food habits, based on other studies reported in the literature.