Distributional Equivalence and Subcompositional Coherence in the Analysis of Compositional Data,Contingency Tables and Ratio-Scale Measurements

We consider two fundamental properties in the analysis of two-way tables of positive data: the principle of distributional equivalence, one of the cornerstones of correspondence analysis of contingency tables, and the principle of subcompositional coherence, which forms the basis of compositional data analysis. For an analysis to be subcompositionally coherent, it suffices to analyze the ratios of the data values. A common approach to dimension reduction in compositional data analysis is to perform principal component analysis on the logarithms of ratios, but this method does not obey the principle of distributional equivalence. We show that by introducing weights for the rows and columns, the method achieves this desirable property and can be applied to a wider class of methods. This weighted log-ratio analysis is theoretically equivalent to “spectral mapping”, a multivariate method developed almost 30 years ago for displaying ratio-scale data from biological activity spectra. The close relationship between spectral mapping and correspondence analysis is also explained, as well as their connection with association modeling. The weighted log-ratio methodology is used here to visualize frequency data in linguistics and chemical compositional data in archeology. The first author acknowledges research support from the Fundación BBVA in Madrid as well as partial support by the Spanish Ministry of Education and Science, grant MEC-SEJ2006-14098. The constructive comments of the referees, who also brought additional relevant literature to our attention, significantly improved our article.