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A novel methodology for finding the regulation on gene expression data
Authors:Wei Liu  Bo Wang  Jarka Glassey  Elaine Martin  Jian Zhao
Institution:a The Key Laboratory of Biomedical Information Engineering of Ministry of Education, School of Life Science and Technology, Xi’an Jiaotong University, Xi’an 710049, China
b School of Chemical Engineering and Advanced Materials, University of Newcastle upon Tyne, Merz Court, Newcastle upon Tyne NE1 7RU, UK
Abstract:DNA microarray technology is a high throughput and parallel technique for genomic investigation due to its advantages of simultaneously surveying features of large scales complex data in biology. This paper aims to find feature subset to build the classifier for gene expression data analysis. At first, K-means clustering algorithm was carried out on the dataset of yeast cell cycle. Based on rand calculation, a statistical method was used to pick out the data points (genes) for classifier design. Meanwhile, the principal component analysis was applied to help to construct the classifier. For the validation of classifier built and prediction of a target subset of genes, discriminant analysis in terms of partial least square regression and artificial neural network were also performed.
Keywords:Classifier design  Discriminant analysis  Gene expression data  Rand calculation
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