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Exome sequencing identifies recurrent somatic RAC1 mutations in melanoma
Authors:Michael Krauthammer  Yong Kong  Byung Hak Ha  Perry Evans  Antonella Bacchiocchi  James P McCusker  Elaine Cheng  Matthew J Davis  Gerald Goh  Murim Choi  Stephan Ariyan  Deepak Narayan  Ken Dutton-Regester  Ana Capatana  Edna C Holman  Marcus Bosenberg  Mario Sznol  Harriet M Kluger  Douglas E Brash  David F Stern  Miguel A Materin  Roger S Lo  Shrikant Mane  Shuangge Ma  Kenneth K Kidd  Nicholas K Hayward  Richard P Lifton  Joseph Schlessinger  Titus J Boggon  Ruth Halaban
Affiliation:Department of Pathology, Yale University School of Medicine, New Haven, Connecticut, USA.
Abstract:We characterized the mutational landscape of melanoma, the form of skin cancer with the highest mortality rate, by sequencing the exomes of 147 melanomas. Sun-exposed melanomas had markedly more ultraviolet (UV)-like C>T somatic mutations compared to sun-shielded acral, mucosal and uveal melanomas. Among the newly identified cancer genes was PPP6C, encoding a serine/threonine phosphatase, which harbored mutations that clustered in the active site in 12% of sun-exposed melanomas, exclusively in tumors with mutations in BRAF or NRAS. Notably, we identified a recurrent UV-signature, an activating mutation in RAC1 in 9.2% of sun-exposed melanomas. This activating mutation, the third most frequent in our cohort of sun-exposed melanoma after those of BRAF and NRAS, changes Pro29 to serine (RAC1(P29S)) in the highly conserved switch I domain. Crystal structures, and biochemical and functional studies of RAC1(P29S) showed that the alteration releases the conformational restraint conferred by the conserved proline, causes an increased binding of the protein to downstream effectors, and promotes melanocyte proliferation and migration. These findings raise the possibility that pharmacological inhibition of downstream effectors of RAC1 signaling could be of therapeutic benefit.
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