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A novel retinoblastoma therapy from genomic and epigenetic analyses
Authors:Zhang Jinghui  Benavente Claudia A  McEvoy Justina  Flores-Otero Jacqueline  Ding Li  Chen Xiang  Ulyanov Anatoly  Wu Gang  Wilson Matthew  Wang Jianmin  Brennan Rachel  Rusch Michael  Manning Amity L  Ma Jing  Easton John  Shurtleff Sheila  Mullighan Charles  Pounds Stanley  Mukatira Suraj  Gupta Pankaj  Neale Geoff  Zhao David  Lu Charles  Fulton Robert S  Fulton Lucinda L  Hong Xin  Dooling David J  Ochoa Kerri  Naeve Clayton  Dyson Nicholas J  Mardis Elaine R  Bahrami Armita  Ellison David  Wilson Richard K  Downing James R  Dyer Michael A
Institution:Department of Computational Biology and Bioinformatics, St Jude Children's Research Hospital, Memphis, Tennessee 38105, USA.
Abstract:Retinoblastoma is an aggressive childhood cancer of the developing retina that is initiated by the biallelic loss of RB1. Tumours progress very quickly following RB1 inactivation but the underlying mechanism is not known. Here we show that the retinoblastoma genome is stable, but that multiple cancer pathways can be epigenetically deregulated. To identify the mutations that cooperate with RB1 loss, we performed whole-genome sequencing of retinoblastomas. The overall mutational rate was very low; RB1 was the only known cancer gene mutated. We then evaluated the role of RB1 in genome stability and considered non-genetic mechanisms of cancer pathway deregulation. For example, the proto-oncogene SYK is upregulated in retinoblastoma and is required for tumour cell survival. Targeting SYK with a small-molecule inhibitor induced retinoblastoma tumour cell death in vitro and in vivo. Thus, retinoblastomas may develop quickly as a result of the epigenetic deregulation of key cancer pathways as a direct or indirect result of RB1 loss.
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