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Variation in genome-wide mutation rates within and between human families
Authors:Conrad Donald F  Keebler Jonathan E M  DePristo Mark A  Lindsay Sarah J  Zhang Yujun  Casals Ferran  Idaghdour Youssef  Hartl Chris L  Torroja Carlos  Garimella Kiran V  Zilversmit Martine  Cartwright Reed  Rouleau Guy A  Daly Mark  Stone Eric A  Hurles Matthew E  Awadalla Philip; Genomes Project
Institution:Wellcome Trust Sanger Institute, Hinxton, Cambridge, UK.
Abstract:J.B.S. Haldane proposed in 1947 that the male germline may be more mutagenic than the female germline. Diverse studies have supported Haldane's contention of a higher average mutation rate in the male germline in a variety of mammals, including humans. Here we present, to our knowledge, the first direct comparative analysis of male and female germline mutation rates from the complete genome sequences of two parent-offspring trios. Through extensive validation, we identified 49 and 35 germline de novo mutations (DNMs) in two trio offspring, as well as 1,586 non-germline DNMs arising either somatically or in the cell lines from which the DNA was derived. Most strikingly, in one family, we observed that 92% of germline DNMs were from the paternal germline, whereas, in contrast, in the other family, 64% of DNMs were from the maternal germline. These observations suggest considerable variation in mutation rates within and between families.
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