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TTC21B contributes both causal and modifying alleles across the ciliopathy spectrum
Authors:Davis Erica E  Zhang Qi  Liu Qin  Diplas Bill H  Davey Lisa M  Hartley Jane  Stoetzel Corinne  Szymanska Katarzyna  Ramaswami Gokul  Logan Clare V  Muzny Donna M  Young Alice C  Wheeler David A  Cruz Pedro  Morgan Margaret  Lewis Lora R  Cherukuri Praveen  Maskeri Baishali  Hansen Nancy F  Mullikin James C  Blakesley Robert W  Bouffard Gerard G;NISC Comparative Sequencing Program  Gyapay Gabor  Rieger Susanne  Tönshoff Burkhard  Kern Ilse  Soliman Neveen A  Neuhaus Thomas J  Swoboda Kathryn J  Kayserili Hulya  Gallagher Tomas E  Lewis Richard A  Bergmann Carsten  Otto Edgar A  Saunier Sophie  Scambler Peter J  Beales Philip L
Institution:Center for Human Disease Modeling, Department of Cell Biology, Duke University Medical Center, Durham, North Carolina, USA.
Abstract:Ciliary dysfunction leads to a broad range of overlapping phenotypes, collectively termed ciliopathies. This grouping is underscored by genetic overlap, where causal genes can also contribute modifier alleles to clinically distinct disorders. Here we show that mutations in TTC21B, which encodes the retrograde intraflagellar transport protein IFT139, cause both isolated nephronophthisis and syndromic Jeune asphyxiating thoracic dystrophy. Moreover, although resequencing of TTC21B in a large, clinically diverse ciliopathy cohort and matched controls showed a similar frequency of rare changes, in vivo and in vitro evaluations showed a significant enrichment of pathogenic alleles in cases (P < 0.003), suggesting that TTC21B contributes pathogenic alleles to ~5% of ciliopathy cases. Our data illustrate how genetic lesions can be both causally associated with diverse ciliopathies and interact in trans with other disease-causing genes and highlight how saturated resequencing followed by functional analysis of all variants informs the genetic architecture of inherited disorders.
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