Active-site mutants of class B beta-lactamases: substrate binding and mechanistic study |
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Authors: | Prosperi-Meys C de Seny D Llabres G Galleni M Lamotte-Brasseur J |
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Institution: | (1) Service de Physique Expérimentale, Institut de Physique (B5), University of Liège, Sart-Tilman, 4000 Liège (Belgium), Fax +32 4 3662813, e-mail: christelle.prosperi@ulg.ac.be, BE;(2) Centre d'Ingénierie des Protéines, Institut de Chimie (B6), University of Liège, Sart-Tilman, 4000 Liège (Belgium), BE;(3) Unité de Cristallographie, Institut de Physique (B5), University of Liège, Sart-Tilman, 4000 Liège (Belgium), BE |
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Abstract: | Increased resistance to β-lactam antibiotics is mainly due to β-lactamases. X-ray structures of zinc β-lactamases unraveled
the coordination of the metal ions, but their mode of action remains unclear. Recently, enzymes in which one of the zinc ligands
was mutated have been characterized and their catalytic activity against several β-lactam antibiotics measured. A molecular
modeling study of these enzymes was performed here to explain the catalytic activity of the mutants. Coordination around the
zinc ions influences the way the tetrahedral intermediate is bound; any modification influences the first recognition of the
substrate by the enzyme. For all the studied mutants, at least one of the interactions fails, inducing a loss of catalytic
efficiency compared to the wild type. The present studies show that the enzyme cavity is a structure of high plasticity both
structurally and mechanistically and that local modifications may propagate its effects far from the mutated amino
acid.
Received 28 August 2002; received after revision 22 October 2002; accepted 24 October 2002
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ID="*"Corresponding author. |
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Keywords: | , Catalytic mechanism, metallo-β,-lactamase, molecular mechanics, molecular modeling, penicillin binding, zinc enzyme, |
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