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Genome sequence of the human malaria parasite Plasmodium falciparum
Authors:Gardner Malcolm J  Hall Neil  Fung Eula  White Owen  Berriman Matthew  Hyman Richard W  Carlton Jane M  Pain Arnab  Nelson Karen E  Bowman Sharen  Paulsen Ian T  James Keith  Eisen Jonathan A  Rutherford Kim  Salzberg Steven L  Craig Alister  Kyes Sue  Chan Man-Suen  Nene Vishvanath  Shallom Shamira J  Suh Bernard  Peterson Jeremy  Angiuoli Sam  Pertea Mihaela  Allen Jonathan  Selengut Jeremy  Haft Daniel  Mather Michael W  Vaidya Akhil B  Martin David M A  Fairlamb Alan H  Fraunholz Martin J  Roos David S  Ralph Stuart A  McFadden Geoffrey I  Cummings Leda M  Subramanian G Mani  Mungall Chris  Venter J Craig  Carucci Daniel J
Affiliation:The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, Maryland 20850, USA. gardner@tigr.org
Abstract:The parasite Plasmodium falciparum is responsible for hundreds of millions of cases of malaria, and kills more than one million African children annually. Here we report an analysis of the genome sequence of P. falciparum clone 3D7. The 23-megabase nuclear genome consists of 14 chromosomes, encodes about 5,300 genes, and is the most (A + T)-rich genome sequenced to date. Genes involved in antigenic variation are concentrated in the subtelomeric regions of the chromosomes. Compared to the genomes of free-living eukaryotic microbes, the genome of this intracellular parasite encodes fewer enzymes and transporters, but a large proportion of genes are devoted to immune evasion and host-parasite interactions. Many nuclear-encoded proteins are targeted to the apicoplast, an organelle involved in fatty-acid and isoprenoid metabolism. The genome sequence provides the foundation for future studies of this organism, and is being exploited in the search for new drugs and vaccines to fight malaria.
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