The central dusty torus in the active nucleus of NGC 1068

Active galactic nuclei (AGNs) display many energetic phenomena--broad emission lines, X-rays, relativistic jets, radio lobes--originating from matter falling onto a supermassive black hole. It is widely accepted that orientation effects play a major role in explaining the observational appearance of AGNs. Seen from certain directions, circum-nuclear dust clouds would block our view of the central powerhouse. Indirect evidence suggests that the dust clouds form a parsec-sized torus-shaped distribution. This explanation, however, remains unproved, as even the largest telescopes have not been able to resolve the dust structures. Here we report interferometric mid-infrared observations that spatially resolve these structures in the galaxy NGC 1068. The observations reveal warm (320 K) dust in a structure 2.1 parsec thick and 3.4 parsec in diameter, surrounding a smaller hot structure. As such a configuration of dust clouds would collapse in a time much shorter than the active phase of the AGN, this observation requires a continual input of kinetic energy to the cloud system from a source coexistent with the AGN.     

Orbital forcing of Cretaceous river discharge in tropical Africa and ocean response

The tropics have been suggested as the drivers of global ocean and atmosphere circulation and biogeochemical cycling during the extreme warmth of the Cretaceous period; but the links between orbital forcing, freshwater runoff and the biogeochemistry of continental margins in extreme greenhouse conditions are not fully understood. Here we present Cretaceous records of geochemical tracers for freshwater runoff obtained from a sediment core off the Ivory Coast that indicate that alternating periods of arid and humid African climate were driven by orbital precession. Our simulations of the precession-driven patterns of river discharge with a global climate model suggest that ocean anoxia and black shale sedimentation were directly caused by high river discharge, and occurred specifically when the northern equinox coincided with perihelion (the minimum distance between the Sun and the Earth). We conclude that, in a warm climate, the oceans off tropical continental margins respond rapidly and sensitively to even modest changes in river discharge.     

Bacterial LPX motif-harboring virulence factors constitute a species-spanning family of cell-penetrating effectors

Effector proteins are key virulence factors of pathogenic bacteria that target and subvert the functions of essential host defense mechanisms. Typically, these proteins are delivered into infected host cells via the type III secretion system (T3SS). Recently, however, several effector proteins have been found to enter host cells in a T3SS-independent manner thereby widening the potential range of these virulence factors. Prototypes of such bacteria-derived cell-penetrating effectors (CPEs) are the Yersinia enterocolitica-derived YopM as well as the Salmonella typhimurium effector SspH1. Here, we investigated specifically the group of bacterial LPX effector proteins comprising the Shigella IpaH proteins, which constitute a subtype of the leucine-rich repeat protein family and share significant homologies in sequence and structure. With particular emphasis on the Shigella-effector IpaH9.8, uptake into eukaryotic cell lines was shown. Recombinant IpaH9.8 (rIpaH9.8) is internalized via endocytic mechanisms and follows the endo-lysosomal pathway before escaping into the cytosol. The N-terminal alpha-helical domain of IpaH9.8 was identified as the protein transduction domain required for its CPE ability as well as for being able to deliver other proteinaceous cargo. rIpaH9.8 is functional as an ubiquitin E3 ligase and targets NEMO for poly-ubiquitination upon cell penetration. Strikingly, we could also detect other recombinant LPX effector proteins from Shigella and Salmonella intracellularly when applied to eukaryotic cells. In this study, we provide further evidence for the general concept of T3SS-independent translocation by identifying novel cell-penetrating features of these LPX effectors revealing an abundant species-spanning family of CPE.     

Protein profiling of genomic instability in endometrial cancer

DNA aneuploidy has been identified as a prognostic factor in the majority of epithelial malignancies. We aimed at identifying ploidy-associated protein expression in endometrial cancer of different prognostic subgroups. Comparison of gel electrophoresis-based protein expression patterns between normal endometrium (n?=?5), diploid (n?=?7), and aneuploid (n?=?7) endometrial carcinoma detected 121 ploidy-associated protein forms, 42 differentially expressed between normal endometrium and diploid endometrioid carcinomas, 37 between diploid and aneuploid endometrioid carcinomas, and 41 between diploid endometrioid and aneuploid uterine papillary serous cancer. Proteins were identified by mass spectrometry and evaluated by Ingenuity Pathway Analysis. Targets were confirmed by liquid chromatography/mass spectrometry. Mass spectrometry identified 41 distinct polypeptides and pathway analysis resulted in high-ranked networks with vimentin and Nf-κB as central nodes. These results identify ploidy-associated protein expression differences that overrule histopathology-associated expression differences and emphasize particular protein networks in genomic stability of endometrial cancer.     

On the urinary elimination of methoxypromazine in man

Zusammenfassung Die Ausscheidung eines neuen neuroleptisch wirksamen Phenothiazinderivates — Mopazin — im Harn wurde spektrophotometrisch und papierchromatographisch untersucht. Als wichtigstes Abbauprodukt wurde Methoxypromazin-sulfoxyd gefunden. Daneben waren unverändertes Methoxypromazin und 1–3 nicht identifizierte Abbauprodukte nachzuweisen. Bei den letzteren handelt es sich möglicherweise um Konjugate.     

Bottom-up effects of plant diversity on multitrophic interactions in a biodiversity experiment

Biodiversity is rapidly declining, and this may negatively affect ecosystem processes, including economically important ecosystem services. Previous studies have shown that biodiversity has positive effects on organisms and processes across trophic levels. However, only a few studies have so far incorporated an explicit food-web perspective. In an eight-year biodiversity experiment, we studied an unprecedented range of above- and below-ground organisms and multitrophic interactions. A multitrophic data set originating from a single long-term experiment allows mechanistic insights that would not be gained from meta-analysis of different experiments. Here we show that plant diversity effects dampen with increasing trophic level and degree of omnivory. This was true both for abundance and species richness of organisms. Furthermore, we present comprehensive above-ground/below-ground biodiversity food webs. Both above ground and below ground, herbivores responded more strongly to changes in plant diversity than did carnivores or omnivores. Density and richness of carnivorous taxa was independent of vegetation structure. Below-ground responses to plant diversity were consistently weaker than above-ground responses. Responses to increasing plant diversity were generally positive, but were negative for biological invasion, pathogen infestation and hyperparasitism. Our results suggest that plant diversity has strong bottom-up effects on multitrophic interaction networks, with particularly strong effects on lower trophic levels. Effects on higher trophic levels are indirectly mediated through bottom-up trophic cascades.     

Food spectrum analysis of the Asian toad,Duttaphrynus melanostictus (Schneider, 1799) (Anura: Bufonidae), from Timor Island,Wallacea

The Asian toad, Duttaphrynus melanostictus (Schneider, 1799), is widespread throughout tropical Asia and very abundant where it occurs. It was relatively recently introduced to Timor, the second largest island in the biogeographic region called Wallacea. Timor Island shows an exceptionally high level of endemism in a wide range of faunal groups and there are concerns that D. melanostictus may have a negative impact on this diversity, including vertebrates, through direct predation. To evaluate the impact the diet of D. melanostictus might have on the local fauna, gut contents of 83 preserved toad specimens from five habitat types in Timor-Leste, a country occupying the eastern half of Timor Island, were examined. We identified 5581 prey items, comprising the following animal groups: annelids; snails and slugs; spiders and harvestmen; woodlice; millipedes and centipedes; grasshoppers, crickets and earwigs; termites; thrips and true bugs; beetles; ants; hymenopterans other than ants; true flies; butterflies; unidentified insects; and insect larvae. Small eusocial insects (ants and termites) constituted the major part of the diet (61.6% and 23.4%, respectively). No vertebrate prey was recorded. Prey item composition did not differ between habitats. The wide prey spectrum well indicates that D. melanostictus is a generalist invertebrate feeder, as other studies, from regions where this species occurs naturally, have already shown. Although the Asian toad seems to not generally prey on vertebrates, vertebrate species that are morphologically similar to invertebrates in their overall appearance may be consumed. Hence, a negative effect on some taxa (e.g. blindsnakes) may be possible. We also present some limited data on intestinal parasites occurring in D. melanostictus.     

Deer mouse ( Peromyscus maniculatus ) home-range size and fidelity in sage-steppe habitat

Within a species, home-range size can vary due to factors such as sex, mass, age, and breeding condition of individuals as well as habitat type, food availability, population density, and season. The objectives of this study were to estimate home ranges of deer mice ( Peromyscus maniculatus ) in sage-steppe habitat and to test the hypothesis that several factors (sex, mass, reproductive status, and seasonality) affect home-range size. We also tested the hypothesis that deer mice exhibit home-range fidelity over time. Passive integrated transponder (PIT) technology was used to estimate home ranges in June and September 2006. Home-range estimates varied from 360 m 2 to 5868 m 2 (65 individuals, 753 observations). Home-range size increased by approximately 60% from June to September. Besides seasonality, none of the other predictors of home range were informative in explaining the variation in home range. Deer mice recaptured in September (3 months after initial capture) had high fidelity in home-range use (42.1% [SE = 8.4%] overlap with 74.1% [SE = 8.7%] area conserved; n = 9). All animals for which home range was estimated in both seasons retained some fraction of their June home range in September. Results support the use of combined location data collected over long periods, such as weeks or months, to estimate home range for deer mice. The results have implications for deer mouse–pathogen ecology, particularly with respect to modeling transmission of Sin Nombre virus—a pathogen that is directly transmitted by deer mice.