Subset threshold autoregression

We develop in this paper an efficient way to select the best subset threshold autoregressive model. The proposed method uses a stochastic search idea. Differing from most conventional approaches, our method does not require us to fix the delay or the threshold parameters in advance. By adopting the Markov chain Monte Carlo techniques, we can identify the best subset model from a very large of number of possible models, and at the same time estimate the unknown parameters. A simulation experiment shows that the method is very effective. In its application to the US unemployment rate, the stochastic search method successfully selects lag one as the time delay and five best models from more than 4000 choices. Copyright © 2003 John Wiley & Sons, Ltd.     

Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite

From the standpoints of both basic research and biotechnology, there is considerable interest in reaching a clearer understanding of the diversity of biological mechanisms employed during lignocellulose degradation. Globally, termites are an extremely successful group of wood-degrading organisms and are therefore important both for their roles in carbon turnover in the environment and as potential sources of biochemical catalysts for efforts aimed at converting wood into biofuels. Only recently have data supported any direct role for the symbiotic bacteria in the gut of the termite in cellulose and xylan hydrolysis. Here we use a metagenomic analysis of the bacterial community resident in the hindgut paunch of a wood-feeding 'higher' Nasutitermes species (which do not contain cellulose-fermenting protozoa) to show the presence of a large, diverse set of bacterial genes for cellulose and xylan hydrolysis. Many of these genes were expressed in vivo or had cellulase activity in vitro, and further analyses implicate spirochete and fibrobacter species in gut lignocellulose degradation. New insights into other important symbiotic functions including H2 metabolism, CO2-reductive acetogenesis and N2 fixation are also provided by this first system-wide gene analysis of a microbial community specialized towards plant lignocellulose degradation. Our results underscore how complex even a 1-microl environment can be.     

Verbal and non-verbal intelligence changes in the teenage brain

Intelligence quotient (IQ) is a standardized measure of human intellectual capacity that takes into account a wide range of cognitive skills. IQ is generally considered to be stable across the lifespan, with scores at one time point used to predict educational achievement and employment prospects in later years. Neuroimaging allows us to test whether unexpected longitudinal fluctuations in measured IQ are related to brain development. Here we show that verbal and non-verbal IQ can rise or fall in the teenage years, with these changes in performance validated by their close correlation with changes in local brain structure. A combination of structural and functional imaging showed that verbal IQ changed with grey matter in a region that was activated by speech, whereas non-verbal IQ changed with grey matter in a region that was activated by finger movements. By using longitudinal assessments of the same individuals, we obviated the many sources of variation in brain structure that confound cross-sectional studies. This allowed us to dissociate neural markers for the two types of IQ and to show that general verbal and non-verbal abilities are closely linked to the sensorimotor skills involved in learning. More generally, our results emphasize the possibility that an individual's intellectual capacity relative to their peers can decrease or increase in the teenage years. This would be encouraging to those whose intellectual potential may improve, and would be a warning that early achievers may not maintain their potential.     

Protein kinase D inhibitor CRT0066101 suppresses bladder cancer growth in vitro and xenografts via blockade of the cell cycle at G2/M

The protein kinase D (PKD) family of proteins are important regulators of tumor growth, development, and progression. CRT0066101, an inhibitor of PKD, has antitumor activity in multiple types of carcinomas. However, the effect and mechanism of CRT0066101 in bladder cancer are not understood. In the present study, we show that CRT0066101 suppressed the proliferation and migration of four bladder cancer cell lines in vitro. We also demonstrate that CRT0066101 blocked tumor growth in a mouse flank xenograft model of bladder cancer. To further assess the role of PKD in bladder carcinoma, we examined the three PKD isoforms and found that PKD2 was highly expressed in eight bladder cancer cell lines and in urothelial carcinoma tissues from the TCGA database, and that short hairpin RNA (shRNA)-mediated knockdown of PKD2 dramatically reduced bladder cancer growth and invasion in vitro and in vivo, suggesting that the effect of the compound in bladder cancer is mediated through inhibition of PKD2. This notion was corroborated by demonstrating that the levels of phospho-PKD2 were markedly decreased in CRT0066101-treated bladder tumor explants. Furthermore, our cell cycle analysis by flow cytometry revealed that CRT0066101 treatment or PKD2 silencing arrested bladder cancer cells at the G2/M phase, the arrest being accompanied by decreases in the levels of cyclin B1, CDK1 and phospho-CDK1 (Thr161) and increases in the levels of p27^Kip1 and phospho-CDK1 (Thr14/Tyr15). Moreover, CRT0066101 downregulated the expression of Cdc25C, which dephosphorylates/activates CDK1, but enhanced the activity of the checkpoint kinase Chk1, which inhibits CDK1 by phosphorylating/inactivating Cdc25C. Finally, CRT0066101 was found to elevate the levels of Myt1, Wee1, phospho-Cdc25C (Ser216), Gadd45α, and 14-3-3 proteins, all of which reduce the CDK1-cyclin B1 complex activity. These novel findings suggest that CRT0066101 suppresses bladder cancer growth by inhibiting PKD2 through induction of G2/M cell cycle arrest, leading to the blockade of cell cycle progression.     

Neurolinguistics: structural plasticity in the bilingual brain

Humans have a unique ability to learn more than one language--a skill that is thought to be mediated by functional (rather than structural) plastic changes in the brain. Here we show that learning a second language increases the density of grey matter in the left inferior parietal cortex and that the degree of structural reorganization in this region is modulated by the proficiency attained and the age at acquisition. This relation between grey-matter density and performance may represent a general principle of brain organization.     

A complementary transposon tool kit for Drosophila melanogaster using P and piggyBac

With the availability of complete genome sequence for Drosophila melanogaster, one of the next strategic goals for fly researchers is a complete gene knockout collection. The P-element transposon, the workhorse of D. melanogaster molecular genetics, has a pronounced nonrandom insertion spectrum. It has been estimated that 87% saturation of the approximately 13,500-gene complement of D. melanogaster might require generating and analyzing up to 150,000 insertions. We describe specific improvements to the lepidopteran transposon piggyBac and the P element that enabled us to tag and disrupt genes in D. melanogaster more efficiently. We generated over 29,000 inserts resulting in 53% gene saturation and a more diverse collection of phenotypically stronger insertional alleles. We found that piggyBac has distinct global and local gene-tagging behavior from that of P elements. Notably, piggyBac excisions from the germ line are nearly always precise, piggyBac does not share chromosomal hotspots associated with P and piggyBac is more effective at gene disruption because it lacks the P bias for insertion in 5' regulatory sequences.     

Effects of precocene II and juvenile hormone III on the activity of neurosecretory A-cells inOncopeltus fasciatus

Summary Application of precocene II, topically or by contact method, appears to inhibit the synthetic activity of neurosecretory A-cells of the pars intercerebralis ofOncopeltus fasciatus. Treatment of precocene-treated insects with JH III apparently stimulates the secretory activity of these cells.Supported by National Research Council of Canada grant No. A4669.We thank Dr G. B. Staal, Zoecon Corporation, Palo Alto, California, for the gift of precocene II.     

Survival, reproductive output, and transplant potential of Penstemon tubiflorus (tube penstemon)

Survival, reproductive output, and transplant success were studied for an Iowa population of Penstemon tubiflorus (tube penstemon), a species that is rare to uncommon through much of its range. The population was discovered in 2003 and is one of only 6 populations that have been documented in Iowa. I began monitoring the new population when 2 cohorts were permanently marked, the first in 2005 and the second in 2007. I estimated survival, flowering, and reproductive output. Then, I introduced greenhouse-grown transplants to 2 new sites and the original site. Survival data showed that P. tubiflorus is a short-lived perennial (approximately 50% survival after 3 years) with substantial variation in the percentage of individuals that flower in a given year. Recruitment over the 5 years of monitoring varied from zero to 26 individuals per year. Transplant survival was site-specific. However, high survival and robust reproduction output of transplants at one site indicated that there are additional suitable sites near the parent population and suggested that these sites remain unoccupied due to limited seed dispersal. While it is unlikely that pollinator limitation is the cause of low reproduction, further study is needed on the pollination syndrome of the Iowa populations of this and other Penstemon species. Future studies should investigate the possibility that the species is limited by site-specific factors that inhibit germination and the survival of small seedlings. Estudiamos la supervivencia, el rendimiento reproductor y el éxito de transplante en una población de Penstemon tubiflorus (tube penstemon) en Iowa, una especie rara o poco común en gran parte de su rango. Esta población fue descubierta en 2003 y es una de sólo seis poblaciones documentadas en el estado. El monitoreo de la nueva población comenzó cuando se marcaron permanentemente dos cohortes, una en 2005 y la segunda en 2007. Se estimó la supervivencia en la floración y el rendimiento reproductor. Transplantes crecidos en invernadero se introdujeron en dos nuevos sitios y en el sitio original. Los datos de supervivencia indicaron que esta especie es una planta perenne efímera (con una supervivencia de aproximadamente 50% después de tres años), con variación considerable en el porcentaje de individuos que florecen en un año determinado. El reclutamiento de la población nativa durante los cinco años fue monitoreado y varió de cero a 26 individuos entre años. La supervivencia de los transplantes fue específica de cada sitio. No obstante, una alta supervivencia y vigorosa rendimiento reproductor de los transplantes en un sitio indicaron que existen sitios adecuados adicionales cerca de la población parental, y sugiere que estos sitios permanecen desocupados debido a la limitada dispersión de semillas. Aunque es improbable que la causa de la baja reproducción se deba a una escasez de polinizadores, se requiere más investigación sobre el síndrome de polinización de las poblaciones de Iowa de esta y otras especies de Penstemon. Se debe investigar la posibilidad de que la especie se vea limitada por factores específicos al sitio que inhiben la germinación y la supervivencia de las plántulas. Normal.dotm 0 0 1 231 1322 Iowa State University 11 2 1623 12.0 0 false 18 pt 18 pt 0 0 false false false /* Style Definitions */ table.MsoNormalTable {mso-style-name:"Table Normal"; mso-tstyle-rowband-size:0; mso-tstyle-colband-size:0; mso-style-noshow:yes; mso-style-parent:""; mso-padding-alt:0in 5.4pt 0in 5.4pt; mso-para-margin:0in; mso-para-margin-bottom:.0001pt; mso-pagination:widow-orphan; font-size:10.0pt; font-family:"Times New Roman"; mso-fareast-font-family:"Times New Roman";}     

A paleoecologic perspective on past plant invasions in Yellowstone

The role of climate and natural disturbance in the past provides a context for understanding present and future changes in biota. The vegetation history of the Yellowstone region, like that of North America as a whole, is largely one of plant invasions and extinctions in response to changes in climate and environment. When Holocene plant migrations are examined on multiple spatial and temporal scales, several generalities are apparent. First, at a continental and regional scale, plant migration patterns followed the direction of climate change, whereas at local scales plant colonization was governed by site-specific conditions and possibly by biotic interactions. Second, species were individualistic in their response to climate change, and, as their ranges shifted across the landscape, existing communities were dismantled and new ones were formed. Individual species met little resistance from existing communities. Third, rates of species invasion were astonishingly rapid, suggesting that rare long-distance dispersal events were critical. Fourth, fire during periods of climate change was an important catalyst in allowing the invasion of new species, but it is unlikely that a single fire event triggered irreversible vegetation change. Regional climate and biotic changes in response to projected increases in atmospheric CO 2 in the next century suggest an even more complex picture than in the past. Model simulations portray changes in temperature and precipitation in the Yellowstone region that have not occurred in the last 20,000 years. Likewise, projected changes in species ranges, including latitudinal, longitudinal, and elevational shifts, require faster rates than anything observed in the fossil record. Increased fire occurrence may help maintain some native taxa but promote the decline of others. Thus, future conditions are likely to create evermore opportunities for exotic species to invade and establish within the Yellowstone region.     

Recent Advances in the Development of Polymer-supported Phosphines

1 Introduction Recent years have seen a growing use of polymer-supported reagents by organic chemists in traditional solution-phase synthesis.Of the many reagents supported by polymers available, variations of triphenylphosphine are among the most broadly used. This is because triphenylphosphine is not only a reagent in a wide range of organic reactions~([1]), but it also serves as a ligand in many organometallic reagents~([2]).Most importantly, polymer-supported triphenylphosphine affords the…