SoC处理器的时钟生成器：电路和体系结构

本书涵盖了面向SoC（System　on　Chip，片上系统）处理器的集成综合器电路设计的论题，采取了一种更为全局的设计观念来考察电路级和体系结构级的设计空间。书中的论述十分广泛，而且包括电路理论和锁相环反馈控制理论的综述。在电路级方面，讨论包括深亚微米数字CMOS过程的低功耗模拟设计、供电噪声效应、设备噪声；在体系结构级方面的论述，涵盖了连续时间和离散时间模型的锁相环分析，以及锁相行为的细节分析。还有一些章节对特定的时钟生成器模块做了电路级和系统结构级的深入描述，其中包括高供电噪声屏蔽的锁相环电路、体系结构和数字锁相环体系结构，考察了为离散时间模拟部件产生低失真采样时钟的方法。这里所说的锁相环包括希格马．代尔塔N分锁相环、直接数字综合（DDS、Direct　Digital　Synthesis）技术和锁相环的非常规应用。本书讨论的面向测试的设计（Dvr、Design　for　Test），其中包括锁相环的精确测量滤波器方法和嵌人式测试（BIST、Built—in—self-test）技术。     

Analysis of the DNA sequence and duplication history of human chromosome 15

Here we present a finished sequence of human chromosome 15, together with a high-quality gene catalogue. As chromosome 15 is one of seven human chromosomes with a high rate of segmental duplication, we have carried out a detailed analysis of the duplication structure of the chromosome. Segmental duplications in chromosome 15 are largely clustered in two regions, on proximal and distal 15q; the proximal region is notable because recombination among the segmental duplications can result in deletions causing Prader-Willi and Angelman syndromes. Sequence analysis shows that the proximal and distal regions of 15q share extensive ancient similarity. Using a simple approach, we have been able to reconstruct many of the events by which the current duplication structure arose. We find that most of the intrachromosomal duplications seem to share a common ancestry. Finally, we demonstrate that some remaining gaps in the genome sequence are probably due to structural polymorphisms between haplotypes; this may explain a significant fraction of the gaps remaining in the human genome.     

Structure of the DNA deaminase domain of the HIV-1 restriction factor APOBEC3G

The human APOBEC3G (apolipoprotein B messenger-RNA-editing enzyme, catalytic polypeptide-like 3G) protein is a single-strand DNA deaminase that inhibits the replication of human immunodeficiency virus-1 (HIV-1), other retroviruses and retrotransposons. APOBEC3G anti-viral activity is circumvented by most retroelements, such as through degradation by HIV-1 Vif. APOBEC3G is a member of a family of polynucleotide cytosine deaminases, several of which also target distinct physiological substrates. For instance, APOBEC1 edits APOB mRNA and AID deaminates antibody gene DNA. Although structures of other family members exist, none of these proteins has elicited polynucleotide cytosine deaminase or anti-viral activity. Here we report a solution structure of the human APOBEC3G catalytic domain. Five alpha-helices, including two that form the zinc-coordinating active site, are arranged over a hydrophobic platform consisting of five beta-strands. NMR DNA titration experiments, computational modelling, phylogenetic conservation and Escherichia coli-based activity assays combine to suggest a DNA-binding model in which a brim of positively charged residues positions the target cytosine for catalysis. The structure of the APOBEC3G catalytic domain will help us to understand functions of other family members and interactions that occur with pathogenic proteins such as HIV-1 Vif.     

Nesomyrmex micheleae,a new ant species (Hymenoptera: Formicidae) from the Dhofar Governorate,Oman, with a synoptic list,distribution map and key to the Arabian Nesomyrmex

ABSTRACT

A new species of the myrmicine ant genus Nesomyrmex Wheeler, 1910, N. micheleae Sharaf sp. nov., is described and illustrated from Oman based on the worker caste. The new species is a member of the N. angulatus species group and can be diagnosed by the golden yellow gaster that contrasts with the dark brown body; the irregular longitudinal rugulose sculpture on the cephalic surface; and the finely punctate mesonotum and propodeal dorsum. A synoptic species list, an updated key and a distribution map to the Arabian Nesomyrmex species are presented. Continued ant species discoveries are central to large-scale diversity patterns, conservation biology and macroecology.

http://www.zoobank.org/urn:lsid:zoobank.org:pub:FBCEACA7-E543-4B10-AB9D-D63319DCB31F http://www.zoobank.org/urn:lsid:zoobank.org:act:1D2EC498-3B2E-43CD-A3C0-1C6C237471E2     

DNA sequence and analysis of human chromosome 18

Chromosome 18 appears to have the lowest gene density of any human chromosome and is one of only three chromosomes for which trisomic individuals survive to term. There are also a number of genetic disorders stemming from chromosome 18 trisomy and aneuploidy. Here we report the finished sequence and gene annotation of human chromosome 18, which will allow a better understanding of the normal and disease biology of this chromosome. Despite the low density of protein-coding genes on chromosome 18, we find that the proportion of non-protein-coding sequences evolutionarily conserved among mammals is close to the genome-wide average. Extending this analysis to the entire human genome, we find that the density of conserved non-protein-coding sequences is largely uncorrelated with gene density. This has important implications for the nature and roles of non-protein-coding sequence elements.     

DNA sequence of human chromosome 17 and analysis of rearrangement in the human lineage

Chromosome 17 is unusual among the human chromosomes in many respects. It is the largest human autosome with orthology to only a single mouse chromosome, mapping entirely to the distal half of mouse chromosome 11. Chromosome 17 is rich in protein-coding genes, having the second highest gene density in the genome. It is also enriched in segmental duplications, ranking third in density among the autosomes. Here we report a finished sequence for human chromosome 17, as well as a structural comparison with the finished sequence for mouse chromosome 11, the first finished mouse chromosome. Comparison of the orthologous regions reveals striking differences. In contrast to the typical pattern seen in mammalian evolution, the human sequence has undergone extensive intrachromosomal rearrangement, whereas the mouse sequence has been remarkably stable. Moreover, although the human sequence has a high density of segmental duplication, the mouse sequence has a very low density. Notably, these segmental duplications correspond closely to the sites of structural rearrangement, demonstrating a link between duplication and rearrangement. Examination of the main classes of duplicated segments provides insight into the dynamics underlying expansion of chromosome-specific, low-copy repeats in the human genome.