Natural variation at Strubbelig Receptor Kinase 3 drives immune-triggered incompatibilities between Arabidopsis thaliana accessions

Accumulation of genetic incompatibilities within species can lead to reproductive isolation and, potentially, speciation. In this study, we show that allelic variation at SRF3 (Strubbelig Receptor Family 3), encoding a receptor-like kinase, conditions the occurrence of incompatibility between Arabidopsis thaliana accessions. The geographical distribution of SRF3 alleles reveals that allelic forms causing epistatic incompatibility with a Landsberg erecta allele at the RPP1 resistance locus are present in A. thaliana accessions in central Asia. Incompatible SRF3 alleles condition for an enhanced early immune response to pathogens as compared to the resistance-dampening effect of compatible SRF3 forms in isogenic backgrounds. Variation in disease susceptibility suggests a basis for the molecular patterns of a recent selective sweep detected at the SRF3 locus in central Asian populations.     

Novel role of cPLA2α in membrane and actin dynamics

Actin-directed processes such as membrane ruffling and cell migration are regulated by specific signal transduction pathways that become activated by growth factor receptors. The same signaling pathways that lead to modifications in actin dynamics also activate cPLA₂α. Moreover, arachidonic acid, the product of cPLA₂α activity, is involved in regulation of actin dynamics. Therefore, it was investigated whether cPLA₂α plays a role in actin dynamics, more specifically during growth factor-induced membrane ruffling and cell migration. Upon stimulation of ruffling and cell migration by growth factors, endogenous cPLA₂α and its active phosphorylated form were shown to relocate at protrusions of the cell membrane involved in actin and membrane dynamics. Inhibition of cPLA₂α activity with specific inhibitors blocked growth factor-induced membrane and actin dynamics, suggesting an important role for cPLA₂α in these processes.     

Distribution of some similarity coefficients for dyadic binary data in the case of associated attributes

Parameters are derived of distributions of three coefficients of similarity between pairs (dyads) of operational taxonomic units for multivariate binary data (presence/absence of attributes) under statistical independence. These are applied to test independence for dyadic data. Association among attributes within operational taxonomic units is allowed. It is also permissible for the two units in the dyad to be drawn from different populations having different presence probabilities of attributes. The variance of the distribution of the similarity coefficients under statistical independence is shown to be relatively large in many empirical situations. This result implies that the practical interpretation of these coefficients requires much care. An application using the Jaccard index is given for the assessment of consensus between psychotherapists and their clients.

---

La distribution des coefficients de similarité pour les données binaires et les attributs associés

Résumé Les paramètres de la distribution de trois coefficients de similarité entre paires d'éléments taxinomiques opérationels de données multivariables binaires (présence/absence) ont été dérivés dans l'hypothèse d'indépendance statistique. Ces paramètres sont utilisés dans un test d'indépendance pour les données dyadiques. L'existence est autorisée, dans la population d'éléments, d'une association entre plusieurs attributs. Il est également permis que les deux éléments de la dyade soient tirés de deux populations différentes, ayant différentes probabilit és quant à la présence des attributs. Dans beaucoup de situations empiriques, la variance des coefficients de similarité peut être relativement élevée dans le cas d'indépendance statistique. Par conséquence, ces coefficients doivent être interprétés avec précaution. Un exemple est donné pour le coefficient de Jaccard, qui a été employé dans une recherche sur la concordance entre des psychothérapeutes et leurs clients.

     

解磷青霉菌的筛选及其对农作物和牧草的增产作用

青霉菌是大多数土壤微生物群体中的成员。许多青霉菌具有生物防治功能、分解土壤矿物功能(包括解磷作用)以及能够分泌植物生长刺激物质。研究利用这些真菌来增加作物产量由此受到注意。本文介绍从土壤中分离、鉴定青霉菌、青霉菌的解磷作用以及对植物生长的刺激作用的研究方法以及策略。从澳大利亚的14种不同的农业土壤中分离并鉴定了解磷的青霉菌。某些菌株具有商业化价值,特别适合在碱性土壤中使用。这些菌株包括一个Penicillium bilaiae以及尚未鉴定的青霉菌种类。     

Spatially resolved observation of crystal-face-dependent catalysis by single turnover counting

Catalytic processes on surfaces have long been studied by probing model reactions on single-crystal metal surfaces under high vacuum conditions. Yet the vast majority of industrial heterogeneous catalysis occurs at ambient or elevated pressures using complex materials with crystal faces, edges and defects differing in their catalytic activity. Clearly, if new or improved catalysts are to be rationally designed, we require quantitative correlations between surface features and catalytic activity--ideally obtained under realistic reaction conditions. Transmission electron microscopy and scanning tunnelling microscopy have allowed in situ characterization of catalyst surfaces with atomic resolution, but are limited by the need for low-pressure conditions and conductive surfaces, respectively. Sum frequency generation spectroscopy can identify vibrations of adsorbed reactants and products in both gaseous and condensed phases, but so far lacks sensitivity down to the single molecule level. Here we adapt real-time monitoring of the chemical transformation of individual organic molecules by fluorescence microscopy to monitor reactions catalysed by crystals of a layered double hydroxide immersed in reagent solution. By using a wide field microscope, we are able to map the spatial distribution of catalytic activity over the entire crystal by counting single turnover events. We find that ester hydrolysis proceeds on the lateral {1010} crystal faces, while transesterification occurs on the entire outer crystal surface. Because the method operates at ambient temperature and pressure and in a condensed phase, it can be applied to the growing number of liquid-phase industrial organic transformations to localize catalytic activity on and in inorganic solids. An exciting opportunity is the use of probe molecules with different size and functionality, which should provide insight into shape-selective or structure-sensitive catalysis and thus help with the rational design of new or more productive heterogeneous catalysts.     

Reading Gauss in the Computer Age: On the U.S. Reception of Gauss’s Number Theoretical Work (1938–1989)

C.F Gauss’s computational work in number theory attracted renewed interest in the twentieth century due to, on the one hand, the edition of Gauss’s Werke, and, on the other hand, the birth of the digital electronic computer. The involvement of the U.S. American mathematicians Derrick Henry Lehmer and Daniel Shanks with Gauss’s work is analysed, especially their continuation of work on topics as arccotangents, factors of n ² + a ², composition of binary quadratic forms. In general, this strand in Gauss’s reception is part of a more general phenomenon, i.e. the influence of the computer on mathematics and one of its effects, the reappraisal of mathematical exploration. I would like to thank the Alexander-von-Humboldt-Stiftung for funding this research. For their comments I would like to thank Catherine Goldstein, Norbert Schappacher and especially John Brillhart.     

杀菌剂对木霉菌的毒性以及农业土壤中木霉菌分离与计数用选择性培养基

通过添加三唑酮刺激分生孢子产量、添加苯菌灵刺激营养生长以及添加曲里通X-100限制菌落扩展。本文进一步优化了木霉菌的选择性分离与计数培养基。三唑酮能有效地抑制轮枝菌生长。在该培养基上青霉菌和曲霉菌的生长受到明显抑制。在测定了多种杀菌剂对木霉菌以及相关的非木霉菌的毒性基础上,研制了更为可靠、有效的木霉菌选择性培养基。该培养基适合于从非木霉菌含量高的样本,也适合于从木霉菌含量低的样本中计数、分离木霉菌。无论样本中木霉菌的群体大还是小,利用该培养基均能进行计数和分离。