Site-specific DICER and DROSHA RNA products control the DNA-damage response

Non-coding RNAs (ncRNAs) are involved in an increasingly recognized number of cellular events. Some ncRNAs are processed by DICER and DROSHA RNases to give rise to small double-stranded RNAs involved in RNA interference (RNAi). The DNA-damage response (DDR) is a signalling pathway that originates from a DNA lesion and arrests cell proliferation3. So far, DICER and DROSHA RNA products have not been reported to control DDR activation. Here we show, in human, mouse and zebrafish, that DICER and DROSHA, but not downstream elements of the RNAi pathway, are necessary to activate the DDR upon exogenous DNA damage and oncogene-induced genotoxic stress, as studied by DDR foci formation and by checkpoint assays. DDR foci are sensitive to RNase A treatment, and DICER- and DROSHA-dependent RNA products are required to restore DDR foci in RNase-A-treated cells. Through RNA deep sequencing and the study of DDR activation at a single inducible DNA double-strand break, we demonstrate that DDR foci formation requires site-specific DICER- and DROSHA-dependent small RNAs, named DDRNAs, which act in a MRE11–RAD50–NBS1-complex-dependent manner (MRE11 also known as MRE11A; NBS1 also known as NBN). DDRNAs, either chemically synthesized or in vitro generated by DICER cleavage, are sufficient to restore the DDR in RNase-A-treated cells, also in the absence of other cellular RNAs. Our results describe an unanticipated direct role of a novel class of ncRNAs in the control of DDR activation at sites of DNA damage.     

Insights on Social Responsibility of NGOS

Systemic Practice and Action Research - The social responsibility of nongovernmental organizations starts from the values this sector defends. Despite the social vocation, a question arises as to...     

Human impact on avian diversity in rural Mediterranean areas

Human activities influence the biodiversity of Mediterranean ecosystems and are involved in the transformation of natural habitats into farmland. We surveyed birds using the point count method on 288 plots at a 50-m radius in three altitudinal landscapes with different rural character in spring and autumn. The results showed that bird species richness in the study area was high (74 species). High total species richness was found in the upland rural landscape characterized by mixed land use and high landscape diversity. The applied richness of total, resident and Sylviidae species illustrated a definite preference for villages with a low human population during the breeding season. Positive and significant correlations were found between rural settlements and Fringillidae, Sylviidae and total bird richness at both periods in the three landscapes. Finally, a clear dependence on the land use/land cover type was shown for the five recorded priority species.     

Engineering evolution to study speciation in yeasts

The Saccharomyces 'sensu stricto' yeasts are a group of species that will mate with one another, but interspecific pairings produce sterile hybrids. A retrospective analysis of their genomes revealed that translocations between the chromosomes of these species do not correlate with the group's sequence-based phylogeny (that is, translocations do not drive the process of speciation). However, that analysis was unable to infer what contribution such rearrangements make to reproductive isolation between these organisms. Here, we report experiments that take an interventionist, rather than a retrospective approach to studying speciation, by reconfiguring the Saccharomyces cerevisiae genome so that it is collinear with that of Saccharomyces mikatae. We demonstrate that this imposed genomic collinearity allows the generation of interspecific hybrids that produce a large proportion of spores that are viable, but extensively aneuploid. We obtained similar results in crosses between wild-type S. cerevisiae and the naturally collinear species Saccharomyces paradoxus, but not with non-collinear crosses. This controlled comparison of the effect of chromosomal translocation on species barriers suggests a mechanism for the generation of redundancy in the S. cerevisiae genome.     

Influence of grassland type, nest type, and shrub encroachment on predation of artificial nests in Chihuahuan Desert grasslands

Nest predation on artificial nests was examined in relation to nest type, grassland type, and shrub encroachment in Chihuahuan Desert grasslands in southern New Mexico. Open-cup ground, open-cup shrub, and spherical shrub nests ( n = 210), mimicking Eastern Meadowlarks ( Sturnella magna ), Black-throated Sparrows ( Amphispiza bilineata ), and Cactus Wrens ( Campylorhynchus brunneicapillus ), were placed in 10 grasslands of tobosa ( Pleuraphis mutica ) and black grama ( Bouteloua eripoda ) with low and heavy levels of mesquite encroachment. Nest predation varied among nest types, grassland types, and shrub encroachment, with highest levels of predation occurring on open-cup shrub nests in tobosa grasslands with heavy shrub encroachment. We detected a significant interaction between nest type and shrub encroachment, but not between grassland type and nest type or grassland type and shrub encroachment. Combined predation rates from the 3 nest types were positively associated with shrub density. The encroachment of shrubs into desert grasslands may act as a corridor for a diversity of species historically not associated with desert grasslands to occupy or move through a patch, increasing vulnerability to nest predation.     

Recurrent gross mutations of the PTEN tumor suppressor gene in breast cancers with deficient DSB repair

Basal-like breast cancer (BBC) is a subtype of breast cancer with poor prognosis. Inherited mutations of BRCA1, a cancer susceptibility gene involved in double-strand DNA break (DSB) repair, lead to breast cancers that are nearly always of the BBC subtype; however, the precise molecular lesions and oncogenic consequences of BRCA1 dysfunction are poorly understood. Here we show that heterozygous inactivation of the tumor suppressor gene Pten leads to the formation of basal-like mammary tumors in mice, and that loss of PTEN expression is significantly associated with the BBC subtype in human sporadic and BRCA1-associated hereditary breast cancers. In addition, we identify frequent gross PTEN mutations, involving intragenic chromosome breaks, inversions, deletions and micro copy number aberrations, specifically in BRCA1-deficient tumors. These data provide an example of a specific and recurrent oncogenic consequence of BRCA1-dependent dysfunction in DNA repair and provide insight into the pathogenesis of BBC with therapeutic implications. These findings also argue that obtaining an accurate census of genes mutated in cancer will require a systematic examination for gross gene rearrangements, particularly in tumors with deficient DSB repair.