The interface of protein-protein complexes: Analysis of contacts and prediction of interactions

Specific protein-protein interactions are essential for cellular functions. Experimentally determined three-dimensional structures of protein-protein complexes offer the possibility to characterize binding interfaces in terms of size, shape and packing density. Comparison with crystal-packing interfaces representing nonspecific protein-protein contacts gives insight into how specific binding differs from nonspecific low-affinity binding. An overview is given on empirical structural rules for specific protein-protein recognition derived from known complex structures. Although single parameters such as interface size, shape or surface complementary show clear trends for different interface types, each parameter alone is insufficient to fully distinguish between specific versus crystal-packing contacts. A combination of interface parameters is, however, well suited to characterize a specific interface. This knowledge provides us with the essential ingredients that make up a specific protein recognition site. It is also of great value for the prediction of protein binding sites and for the evaluation of predicted complex structures. Received 1 October 2007; received after revision 9 November 2007; accepted 9 November 2007     

Role of salivary glands in the maintenance of midgut amylase activity inPeriplaneta americana L.

Summary It was experimentally demonstrated, by the surgical removal of salivary glands and severence of salivary ducts, that most of the amylase in the gut ofPeriplaneta americana comes from the salivary glands.We wish to acknowledge Prof. H. Swarup (Jiwaji University, Gwalior, M.P.) for working facilities provided at School of Studies in Zoology, Vikram University, Ujjain, M.P., and Council of Scientific and Industrial Research, New Delhi, for fincancial support in the form of Junior Research Fellowship to one of us (O.P.A.)     

Carbon dioxide reduction and nitrogenase activity in organo-molybdenum microstructures

Organo-molybdenum microstructures were prepared by visible light irradiation of ammonium molybdate, formaldehyde, ammonium phosphate and a mineral solution. These microstructures are shown to be capable of carbon dioxide photoreduction, nitrogenase activity, and water decomposition, and may represent a metabolic stage between the nonliving and the living.     

Stable isotopic compositions of precipitation events from Kathmandu,southern slope of the Himalayas

Investigation of temporal variations in the stable δ^18O and δD isotopes from Kathmandu＇s precipitation events shows that the relatively enriched δ^18O and δD values in the winter （the dry season, dominated by the westerlies） were positively correlated with temperature, indicating a temperature effect controlling the changes of δ^18O and δD. However, the δ^18O and δD values were depleted in the summer （the wet season, dominated by the Indian monsoon）, which were negatively correlated with precipitation amount, indicating an amount effect. In addition, the comparison of stable isotopes in precipitation from Kathmandu and Mawlong （near the Bay of Bengal） shows that the overall trends of δ^18O and δD values at Kathmandu generally approximate those at Mawlong. However, there remain many differences between the details of the isotopic changes at Kathmandu versus those at Mawlong. Compared with those at Mawlong, the further rainout effect and the more intense lift effect of the oceanic moisture by the high mountains resulted in the more depleted δ^18O and δD values in summer precipitation at Kathmandu. A deuterium excess and the local meteoric water lines reveal that evaporation at Kathmandu exceeds that at Mawlong. The data also show that the Indian monsoon activities at Mawlong are more intense than those at Kathmandu.     

Integrated Bi2O3 nanostructure modified with Au nanoparticles for enhanced photocatalytic activity under visible light irradiation

An integrated Bi_2O_3(i-Bi_2O_3) nanostructure with a particle size 10 nm inducing agglomerated structure were synthesized by dissolving bismuth nitrate pentahydrate in diethylene glycol at 180 ℃ with post heat treatment.The prepared i-Bi_2O_3 nanostructures were employed for the construction of Au/i-Bi_2O_3 composite system and characterized by X-ray diffraction pattern,UV-visible diffuse reflectance spectroscopy(DRS),and transmission electron microscopy,X-ray photoemission spectroscopy(XPS) and Energy dispersive X-ray spectroscopy(EDS).The i-Bi_2O_3 nanostructure and Au/i-Bi_2O_3 composite system were found to exhibit high photocatalytic activity than commercial Bi_2O_3 in decomposing salicylic acid under visible light irradiation.The high catalytic activity of i-Bi_2O_3 nanostructure was deduced to be caused by charge separation facilitated by electron hopping between the particles within the integrated structure and space-charge separation between i-Bi_2O_3 and Au.The charge separation behavior in i-Bi_2O_3 nanostructure was further bolstered by comparing the measured.OH radical produced in the solution with i-Bi_2O_3 nanostructure,commercial Bi_2O_3 and Au/i-Bi_2O_3 composite which readily react with 1,4-terephthalic acid(TA) inducing 2-hydroxy terephthalic acid(TAOH) that shows unique fluorescence peak at 426 nm.The space-charge separation between i-Bi_2O_3 and An was confirmed by measuring the electron spin resonance(ESR) spectra.     

Carbon dioxide reduction and nitrogenase activity in organo-molybdenum microstructures

Summary Organo-molybdenum microstructures were prepared by visible light irradiation of ammonium molybdate, formaldehyde, ammonium phosphate and a mineral solution. These microstructures are shown to be capable of carbon dioxide photoreduction, nitrogenase activity, and water decomposition, and may represent a metabolic stage between the nonliving and the living.We acknowledge the many discussions and aid of Drs Sherwood Chang, Hyman Hartman, and Messrs Glen Pollock and Andrew Brittain. This work was supported in part by NASA research grant NGR 12-001-109, by the University of Hawaii, and by the NASA Ames Research Center.