Modeling the MHC class I pathway by combining predictions of proteasomal cleavage,TAP transport and MHC class I binding

Epitopes presented by major histocompatibility complex (MHC) class I molecules are selected by a multi-step process. Here we present the first computational prediction of this process based on in vitro experiments characterizing proteasomal cleavage, transport by the transporter associated with antigen processing (TAP) and MHC class I binding. Our novel prediction method for proteasomal cleavages outperforms existing methods when tested on in vitro cleavage data. The analysis of our predictions for a new dataset consisting of 390 endogenously processed MHC class I ligands from cells with known proteasome composition shows that the immunological advantage of switching from constitutive to immunoproteasomes is mainly to suppress the creation of peptides in the cytosol that TAP cannot transport. Furthermore, we show that proteasomes are unlikely to generate MHC class I ligands with a C-terminal lysine residue, suggesting processing of these ligands by a different protease that may be tripeptidyl-peptidase II (TPPII).Received 26 November 2004; received after revision 4 February 2005; accepted 4 March 2005S. Tenzer and B. Peters contributed equally to this work.     

A New Discipline of Science-The Study of Open Complex Giant System and Its Methodology

This paper introduces the conception of open complex giant system and the methodology for dealing with the system, with stress on its profound significance in development of science and technology. The authors conclude that the reductionism underlying the exact science is not suitable to open complex giant system, and the only feasible alternative is the meta-synthetic engineering from the qualitative to the quantitative.     

Discussion on Electromagnetic Missile

This paper presents the principle of electromagnetic missile from the mathematical point of view, and verifies rigorously that the radiating power over whole space is limited.     

Long-term Energy Demand and CO_2 Problem in the PRC

The long-term energy demand in China and the-Chinese share in global CO2 emission are forecasted on the basis of scenarios of population growth and economy development up to 2050 proposed in view of the interaction of energy, economy, environment and social development. The total energy demand in 2050 will reach 4.4~ 5.4 billion tce. It is shown in energy supply analysis that coal is China's major energy in primary energy supply. The share of CO2 emission in the future Chinese energy system will be out of proportion to its energy consumption share because of the high persentage of coal to be consumed. It will reach about 27%. The nuclear option which would replace 30.7% of coal in the total primary energy supply will reduce the share by 9.8%. So the policy considerations on the future Chinese energy system is of great importance to the global CO2 issues.     

Applications of Atomic and Molecular Theory to Calculations in Space Science and Engineering

A systematic elaboration is given on atomic and molecular theory problems encountered in dealing with space science and engineering. Three sections are presented in the paper on calculations for gas thermodynamic and transfer properties, characteristics of the optical radiation from the reentry' bodies, and the interaction between surfaces of man-made satellites and incident particles. Researches on them are much related to the fundamental problems regarding the atomic and molecular theory.     

A New Adaptive Formant Vocoder

A new type of vocoder system based upon formant analysis is presented in this paper. The LMS adaptive algorithm is used for tracking formants of speech signals. The results of computer simulation show that the new vocoder has better synthesized speech quality.     

Radar Imaging Based on Iterative Algorithms

It has long been realized that the problem of radar imaging is a special case of image reconstruction in which the data are incomplete and noisy. In other fields, iterative reconstruction algorithms have been used successfully to improve the image quality. This paper studies the application of iterative algorithms in radar imaging. A discrete model is first derived, and the iterative algorithms are then adapted to radar imaging. Although such algorithms are usually time consuming, this paper shows that, if the algorithms are appropriately simplified, it is possible to realize them even in real time. The efficiency of iterative algorithms is shown through computer simulations.     

通信电子战信号反演处理——I：概论

通信电子战信号处理迫切需要一个具有宏观指导意义的方法论。反演方法既是地球物理学中的基本处理方法,又是人类两大基本推理方法的一个子方法。讨论了反演方法及其理论的一般定义。指出在电子学与通信及其信号处理领域,将问题统一到信号反演的框架下,不仅有利于对处理方法的理论研究,而且有利于吸收那些在非电子学领域已经建立的反演方法及其理论。给出了关于通信电子战信号反演处理的定义,并提出其概念模型和目标参数。