Finding finer functions for partially characterized proteins by protein-protein interaction networks

Based on high-throughput data, numerous algorithms have been designed to find functions of novel proteins. However, the effectiveness of such algorithms is currently limited by some fundamental factors, including (1) the low a-priori probability of novel proteins participating in a detailed function; (2) the huge false data present in high-throughput datasets; (3) the incomplete data coverage of functional classes; (4) the abundant but heterogeneous negative samples for training the algorithms; and (5) the lack of detailed functional knowledge for training algorithms. Here, for partially characterized proteins, we suggest an approach to finding their finer functions based on protein interaction sub-networks or gene expression patterns, defined in function-specific subspaces. The proposed approach can lessen the above-mentioned problems by properly defining the prediction range and functionally filtering the noisy data, and thus can efficiently find proteins’ novel functions. For thousands of yeast and human proteins partially characterized, it is able to reliably find their finer functions (e.g., the translational functions) with more than 90% precision. The predicted finer functions are highly valuable both for guiding the follow-up wet-lab validation and for providing the necessary data for training algorithms to learn other proteins.     

国内科技期刊亮点

"直接法"测定蛋白质晶体结构新方法我国科学家近年来在发展"直接法"测定蛋白质晶体结构的研究方面,提出了一种处理单对同晶型置换数据的新方法。     

关于不确定性本—量—利分析的理论探讨

根据市场经济条件下，成本、产销量及利润不确定的特点，讨论了具有现实意义的不确定性本－量－利决策模型的分类和一般分析，并建立了多品种，多不确定因素本－量－利决策模型。     

多参数一致椭圆扩散的一个比较定理及其应用

本文主要讨论多参数一致椭圆扩散的若干样本轨道性质。我们首先建立了多参数一致椭圓扩散与多参数布朗运动之间的一个比较定理,在此基础上进一步得到了多参数一致椭圆扩散象集的Hausdorff维数与Packing维数的上界,以及样本轨道连续模的上界估计。为了记号上的简单,这里只叙述两参数的情形,所有结果均可推广到N参数(N>2)的情形。     

关于S—可分空间和S—局部可分空间

本文引进了S－可分空间和S－局部可分空间，并讨论了它们之间的关系及其有关性质。     

外场与腔场非共振驱动Jaynes－Cummings系统的准能解

本文主要求出了Ｊ－Ｃ系统受与腔场非共振的外场驱动时的准能级及态的近似表达式，设外场与腔模的失谐量△_ｃ远小于耦合常数ｇ，并且腔模光子数较小，在计算中可略去。结果可知，失谐量△_ｃ存在使能级中心位置移动，但对能级分裂量没有影响。相应的光场态为两个位移福克态的叠加。