基于光纤光栅传感技术的基因扩增实验数据分析方法研究

在基因扩增反应室中构建一种适宜高效的温控模型是一个研究热点和难点，国内外学者对此类问题的研究比较活跃。基因扩增反应过程由自动控制程序完成，在这个扩增过程中，外部环境因素通常能影响扩增的最终分析结果，为了能正确分析扩增结果，合理推算扩增进程，文中对反应室热平衡状态下的光纤实验数据采集方法进行了深入研究，用数学方法给出了模块转换函数和反应转换函数等若干定义和相关定理，并依据这些基础理论给出了数据分析结果并对数据采集方法进行了总结，建立了实验数据分析模型，这为形成基因检测控制技术后续控制将能打下坚实基础。实验结果表明了所提出的实验数据分析方法效果良好。     

A novel method for ionizing radiation-induced RNA damage detection by poly（A）-tailing RT-PCR

Ionizing radiation (IR) causes severe cellular damage both directly and indirectly and disrupts RNA integrity. RNA strand breaks are the most frequent type of damage caused by IR. RNA damage is involved in the development of degenerative diseases, including Alzheimer’s disease and Parkinson’s disease. However, the mechanism of mRNA damage and any resulting pathophysiological outcomes are poorly understood. This is partly because there is a lack of sensitive tools to monitor damage randomly occurring in RNA,...     

Bst DNA聚合酶的纯化及等温扩增检测体系的构建

Bst DNA聚合酶是等温扩增反应中的一个关键酶,但由于专利限制,目前国内实验室所使用的Bst DNA聚合酶大多需要从国外进口,价格昂贵且长途运输影响酶活性,因此亟需自主生产出Bst DNA聚合酶应用于等温扩增检测技术.通过构建Bst Fragement的原核表达质粒,采用原核蛋白表达系统和His-Tag亲和纯化手段,制备成本低,活性高,特异性强的Bst DNA聚合酶.同时,针对特定的模板,对自制Bst DNA聚合酶的扩增反应进行了进一步优化,用不同的产物鉴定方法对扩增效果进行检测,并最终筛选出该酶最优的扩增反应条件为60 mM K+、30 mM(NH4)2SO4、pH为9.0.最后,验证了Bst DNA聚合酶能用于快速准确检测肺炎支原体、肺炎衣原体,降低了相关病原体核酸检测的成本,为之后核酸检测在基层医疗的更广泛应用提供了条件.     

恩施悬棺人骨mtDNA初步分析

本文以恩施宋代悬棺的骨骼或牙齿样品为对象,经过一系列的处理,获得并扩增了mtDNA的HVSI区的部分序列,通过几个实验初步认定是古DNA.同时通过与部分现代人mtDNA数据的比较参照,对所研究样品单倍群归属进行了初步确定,发现他们主要属于南方类型,但也可能有北方成分.     

Detection of Grass Carp Hemorrhage Virus （GCHV） from Vietnam and Comparison with GCHV Strain from China

Grass carp plays an important role in small-scale aquaculture in Vietnam. However, a severe disease, known in Vietnam as “Red Spot Disease“, is causing significant economic loss in grass carp aquaculture. In this study, the tissue samples isolated from the grass carp with Red Spot Disease in Vietnam are investigated and eomparied with the control GCHV isolated in China by experimental infection, culture cell infection, serological cross reactivity, and RT-PCR amplifica-tion. Infected grass carp exhibits hemorrhage symptoms about 5 days after experimental injection with GCHV-V (Vietnam) strain. The symptoms and lethality induced by the GCHV-V strain are identical to that induced by the Chinese GCHV-9014 strain. The Chinese GCHV-873 strain in-duces typical cytopathogenic effects in 4 cell lines, such as CIK, CAB, FHM and GCO, from the6 fish cell lines examined. No cytopathogenic effects are observed in all the 6 examined cell lines,including CAB, FHM, CIK, EPC, CCO and G(X), infected by the GCHV-V strain and GCHV-9014 strain. Immunodiffusion assays demonstrate an obvious cross-reactivity among three GCHVstrains. Precipitin lines are clearly observed not only between the anti-GCHV-873 serum and thetwo strains GCHV-873 and GCHV-9014, but also between the anti-GCHV-873 serum and the GCHV-V strain. GCHV can be detected by immunodiffusion assays after three generations of blind propagations in the cell lines inoculated by GCHV-V strain. This implicates that GCHV-Vviruses have been replicated and amplified despite there being no cytopathogenic eifects observed in these examined cell lines. Three genome segments of GCHV, including S8, S9 and S10, are amplified by three sets of PCR primers designed according to the segment sequences published re-cently. The Q8fp and Q8rp primer set specific for genome segment S8 amplifies a 955 bp frag-ment from the extracted sample of diseased fish with Red Spot Disease, and the fragment size is i-dentical to that amplified by the same primer set from control GCHV-873 strain. Simultaneously,the Q9fp and Q9rp primer set specific for genome segment S9 generates a same 635 bp product,and the Q10fp and Q10rp primer set specific for genome segment S10 produces a same 697 bp fragment from both template samples of diseased fish with Red Spot Disease and control GCHV-873 strain. The RT-PCR amplification and corresponding size comparison data indicate that the three GCHV-V genome segments extracted from the diseased grass carp with Red Spot Disease in Vietnam should be identical to that in control GCHV-873 strain from China. The data confirm that the causative agent of grass carp Red Spot Disease in Vietnam is a virus, and the virus is closely similar to GCHV strain in China.     

克隆胃粘膜细胞癌变相关基因的思路

采用ｍＲＮＡ和ＡＰ－ＰＣＲ等技术克隆胃粘膜细胞癌变相关基因在技术上是可行的。胃粘膜细胞癌变相关基因的获得，在阐明胃癌发生机制及胃癌的早期诊断和临床治疗方面，具有重要意义和广阔的应用前景。     

聚合酶链式反应仪基座的热阻建模与分析

对聚合酶链式反应仪(PCR)基座中温度变化规律进行数学建模,求出其过程热阻值,并利用该热阻值对类似模型的温度场进行仿真计算,从而快速地得出考虑若干关键参数的复杂模型的温度场.计算结果显示,PCR仪基座的过程热阻与其自身的导热热阻存在某种关系,进而提出一个对于该关系的假设和数学描述,最后对该假设应用的可行性进行数值计算证明.     

水体粪便污染的线粒体DNA溯源研究(英文)

畜禽粪便和生活污水是造成水体污染的主要因素之一.快速、准确地确定污染源对于水体污染防治尤为重要.近年来,基于线粒体DNA(mtDNA)种属特异性的污染物溯源技术已成为国际研究热点.本文综述了水体粪便污染的mtDNA溯源技术的理论基础及其应用进展,并通过与微生物溯源技术进行比较,分析了mtDNA作为溯源标记物的优势以及存在的问题,从而为实际环境水体中粪便污染的生物溯源工作提供参考.     

氯苄基四氢小檗碱对大鼠肥厚心肌中KATP通道表达的影响

观察心梗诱导的大鼠肥厚心肌中三磷酸腺苷(ATP)敏感性钾离子通道(KATP)的表达,并探讨其影响因素.将雄性大鼠随机分为5 组,分别是假手术组,手术组,普萘洛尔组,氯苄基四氢小檗碱组及内皮素受体拮抗剂组.手术组及药物组的大鼠结扎冠脉左前降支,术后饲养10 d,药物组于术后第6天开始给药,共给药5 d,由反转录-多聚酶链式反应(RT-PCR)方法确定KATP 通道的mRNA表达.实验结果表明,心梗诱导的大鼠肥大心肌中的KATP 通道的mRNA 表达明显上调,经药物干预后有不同程度的降低.心梗诱导的大鼠肥厚心肌中的KATP 通道的mRNA 的表达上调,其表达上调除与β受体有关外,Ca2 离子可能参与对KATP 通道表达的影响.     

Multiplex chimeric primers used in a tetra-primer amplification refractory mutation system PCR to detect two single nucleotide polymorphisms associated with ovarian cancer

目的:建立一种简单快速的方法,可同时检测两个卵巢癌相关单核苷酸多态性位点rs608995和rs749292.方法:采用多重嵌合引物策略改进四引物扩增受阻突变体系聚合酶链式反应(PCR),通过设计rs608995和rs749292的特异性嵌合引物,经单管一次PCR,琼脂糖电泳分析产物长度.结果:对46份全血样本,电泳结果均与测序一致,可准确分型.结论:经多重嵌合引物策略改进的四引物扩增受阻突变体系PCR可简便、快速、准确的获得2个位点的分型结果.