The peroxisomal protein import machinery – a case report of transient ubiquitination with a new flavor

The peroxisomal protein import machinery displays remarkable properties. Be it its capacity to accept already folded proteins as substrates, its complex architecture or its energetics, almost every aspect of this machinery seems unique. The list of unusual properties is still growing as shown by the recent finding that one of its central components, Pex5p, is transiently monoubiquitinated at a cysteine residue. However, the data gathered in recent years also suggest that the peroxisomal import machinery is not that exclusive and similarities with p97/Cdc48-mediated processes and with multisubunit RING-E3 ligases are starting to emerge. Here, we discuss these data trying to distill the principles by which this complex machinery operates. Received 16 July 2008; received after revision 25 August 2008; accepted 29 August 2008     

Architecture,composition and placement of nests of the Cipo Canastero Asthenes luizae (Aves: Furnariidae), a bird endemic to Brazilian mountaintops

Cipo Canastero (Asthenes luizae) is a bird endemic to Brazilian mountaintops, inhabiting rock outcrop habitats of the campos rupestres in the southern Espinhaço Range. Available data about Cipo Canastero’s breeding biology are scarce, incomplete or inconsistent. All nests found to date were built in the plant Vellozia nivea. Based on 84 nests found from 2009 to 2017 in four sites at Serra do Cipó, we described in detail their nesting habits focusing on three groups of characters: nest architecture, composition, and placement. Also, we described nest building. Our major new findings on the nesting habits of A. luizae were: three nest layers distinguishable, inner lining covering the entire nest interior, tunnels and tubes are absent, and the nest sites are not restricted to V. nivea. We recorded a wide range of nest sites, from ground, grasses and rupicolous bromeliads to shrubs and trees, including at least 30 supporting-plant species. Nest supports varied among study sites. Nest building lasted 22 days (one nest) and was done by both members of the pair. Our data can be useful for species conservation and contribute to the knowledge of the natural history of the genus Asthenes.     

CCDC39 is required for assembly of inner dynein arms and the dynein regulatory complex and for normal ciliary motility in humans and dogs

Primary ciliary dyskinesia (PCD) is an inherited disorder characterized by recurrent infections of the upper and lower respiratory tract, reduced fertility in males and situs inversus in about 50% of affected individuals (Kartagener syndrome). It is caused by motility defects in the respiratory cilia that are responsible for airway clearance, the flagella that propel sperm cells and the nodal monocilia that determine left-right asymmetry. Recessive mutations that cause PCD have been identified in genes encoding components of the outer dynein arms, radial spokes and cytoplasmic pre-assembly factors of axonemal dyneins, but these mutations account for only about 50% of cases of PCD. We exploited the unique properties of dog populations to positionally clone a new PCD gene, CCDC39. We found that loss-of-function mutations in the human ortholog underlie a substantial fraction of PCD cases with axonemal disorganization and abnormal ciliary beating. Functional analyses indicated that CCDC39 localizes to ciliary axonemes and is essential for assembly of inner dynein arms and the dynein regulatory complex.     

A quantitative analysis of cleistothecia production inAspergillus nidulans

Resumen Cruzamiento dialélico entre seis cepas del hongo filamentosoAspergillus nidulans fué analizado estadísticamente por le método sugerido porGriffing ⁹ visando establecer los valores de la capacidad general de combinacion y de la capacidad específica de combinación para la cantidad de cleistotécios. Los resultados obtenidos parecen indicar la participación de genes que exhiben effectos aditivos y dominantes. Es sugerido que el método puede ser aplicado en el analisis de otras características incluyendo aquellas de valor económico como producción de antibióticos.     

Resistance to ethidium bromide inAspergillus nidulans

Summary A mutant ofAspergillus nidulans resistant to ethidium bromide was isolated and the semi-dominant gene responsible for this resistance was allocated on linkage group II at 17.42±3.05 units of recombination from thewA₃ gene. The gene also confers cross-resistance to acriflavin, malachite green and crystal violet. It was also shown that riboflavin is antagonistic to the toxic effect of ethidium bromide, at certain concentrations. The mechanisms which could be responsible for the toxic effect of this drug are discussed and compared with those of acriflavin. The use of theEtb ₁ gene in genetical analysis through the parasexual cycle is suggested.Acknowledgements. The authors are thankful to the National Council for the Development of Science and Technology (CNPq) for financial support through PIG-SIP 04/053 FAPESP.     

Modelling conservation in the Amazon basin

Expansion of the cattle and soy industries in the Amazon basin has increased deforestation rates and will soon push all-weather highways into the region's core. In the face of this growing pressure, a comprehensive conservation strategy for the Amazon basin should protect its watersheds, the full range of species and ecosystem diversity, and the stability of regional climates. Here we report that protected areas in the Amazon basin--the central feature of prevailing conservation approaches--are an important but insufficient component of this strategy, based on policy-sensitive simulations of future deforestation. By 2050, current trends in agricultural expansion will eliminate a total of 40% of Amazon forests, including at least two-thirds of the forest cover of six major watersheds and 12 ecoregions, releasing 32 +/- 8 Pg of carbon to the atmosphere. One-quarter of the 382 mammalian species examined will lose more than 40% of the forest within their Amazon ranges. Although an expanded and enforced network of protected areas could avoid as much as one-third of this projected forest loss, conservation on private lands is also essential. Expanding market pressures for sound land management and prevention of forest clearing on lands unsuitable for agriculture are critical ingredients of a strategy for comprehensive conservation.