城市文化环境特质空间分异研究

以大连市甘井子区为例,在城市建成区与郊区的文化环境特质的现状调查基础上,用地理信息系统软件Surfer8.0绘制甘井子区文化环境特质现状等值线图.从区域差异及人群差异角度,研究城市建成区与郊区存在明显的文化环境空间分异,运用因子分析方法对城市郊区人员文化环境偏好分析.研究结果表明:城市郊区对个人精神文化环境关注较少,更重视公共空间文化环境;对制度文化环境关注较少,更重视与生活相关的物质文化环境和行为文化环境.     

沿岸回流区污染物对流扩散的数值模拟

为研究回流区污染物堆积的机理及规律,采用高阶三点紧致差分格式对涡量-流函数方程和污染物对流扩散方程进行高精度数值求解,得到了污染物堆积与回流区岸线角度、排放点位置之间的定量关系.该方法有效抑制了通常的数值方法中对流项差分离散造成数值不稳定的现象,且程序编制简洁,运行效率高。数值计算表明该法有效、可靠.研究结果对沿岸排污点布置、减少海域污染具有一定的现实指导意义,并具有重要的理论价值.     

介质流向对截止阀流场和流阻特性的影响

为探索介质流向对截止阀内部流场和流阻特性的影响,应用SOLIDWORKS软件建立截止阀的三维模型。使用Fluent软件中的有限元法和标准k-ε湍流模型,在不同开度的情况下,采用数值模拟分析的方法,研究不同介质流向下截止阀的流场和流阻特性,分析阀体内部的速度和压力分布规律。结果表明:在两种不同的流向下,阀门的流通能力相差较小;在小开度时,介质高进低出时能够减小阀门的压力损失,在流通高压介质的情况下,高进低出的流向能够极大的减小阀门的关闭力。流场的分析为截止阀的结构设计和优化提供参考。     

Germline-specific dgcr8 knockout in zebrafish using a BACK approach

Zebrafish is an important model to study developmental biology and human diseases. However, an effective approach to achieve spatial and temporal gene knockout in zebrafish has not been well established. In this study, we have developed a new approach, namely bacterial artificial chromosome-rescue-based knockout (BACK), to achieve conditional gene knockout in zebrafish using the Cre/loxP system. We have successfully deleted the DiGeorge syndrome critical region gene 8 (dgcr8) in zebrafish germ line and demonstrated that the maternal-zygotic dgcr8 (MZdgcr8) embryos exhibit MZdicer-like phenotypes with morphological defects which could be rescued by miR-430, indicating that canonical microRNAs play critical role in early development. Our findings establish that Cre/loxP-mediated tissue-specific gene knockout could be achieved using this BACK strategy and that canonical microRNAs play important roles in early embryonic development in zebrafish.     

IFT54 regulates IFT20 stability but is not essential for tubulin transport during ciliogenesis

Intraflagellar transport (IFT) is required for ciliogenesis by ferrying ciliary components using IFT complexes as cargo adaptors. IFT54 is a component of the IFT-B complex and is also associated with cytoplasmic microtubules (MTs). Loss of IFT54 impairs cilia assembly as well as cytoplasmic MT dynamics. The N-terminal calponin homology (CH) domain of IFT54 interacts with tubulins/MTs and has been proposed to transport tubulin during ciliogenesis, whereas the C-terminal coiled-coil (CC) domain binds IFT20. However, the precise function of these domains in vivo is not well understood. We showed that in Chlamydomonas, loss of IFT54 completely blocks ciliogenesis but does not affect spindle formation and proper cell cycle progression, even though IFT54 interacts with mitotic MTs. Interestingly, IFT54 lacking the CH domain allows proper flagellar assembly. The CH domain is required for the association of IFT54 with the axoneme but not with mitotic MTs, and also regulates the flagellar import of IFT54 but not IFT81 and IFT46. The C-terminal CC domain is essential for IFT54 to bind IFT20, and for its recruitment to the basal body and incorporation into IFT complexes. Complete loss of IFT54 or the CC domain destabilizes IFT20. ift54 mutant cells expressing the CC domain alone rescue the stability of IFT20 and form stunted flagella with accumulation of both IFT-A component IFT43 and IFT-B component IFT46, indicating that IFT54 also functions in IFT turn-around at the flagellar tip.     

全长人PPAR-γ的表达、纯化与结构确证

目的建立表达、纯化结构完整的全长人PPAR-γ的方法。方法构建pReceiver-B01-PPAR-γ质粒并转化E．coliBL21（DE3）细胞,诱导表达重组蛋白,优化细胞生长条件;利用亲和色谱和尺寸排阻色谱纯化重组蛋白;胶内酶解重组蛋白,用离子阱质谱仪分析二维AgilentHPLC-Chip纯化的酶解片段;基于MS／MS搜索IPI、Swiss．Prot、NCBInr和MSDB数据库,鉴定重组蛋白。结果在优化的细胞生长条件（TB介质、37℃、0．8mMIPTG、诱导3h）,从每升TB中可获得280mg重组蛋白;两步纯化后,获得176mg、纯度为95％的均质重组PPAR-γ蛋白;经质谱分析和搜索蛋白质数据库,获得均匀地分布在整个PPAR-γ多肽链中的33个阳性肽段,覆盖率为60％,表明重组蛋白为结构完整的全长人PPAR-γ。配体结合活性位点S289、H323、H449和Y473无突变,保证全长人PPAR-γ与配体结合的生物学活性。结论本文所建立的方法能成功用于大量表达结构完整的全长人PPAR-γ,有利于进一步的结构、功能研究和活性配体的筛选。     

Genome-wide association studies of 14 agronomic traits in rice landraces

Uncovering the genetic basis of agronomic traits in crop landraces that have adapted to various agro-climatic conditions is important to world food security. Here we have identified ～ 3.6 million SNPs by sequencing 517 rice landraces and constructed a high-density haplotype map of the rice genome using a novel data-imputation method. We performed genome-wide association studies (GWAS) for 14 agronomic traits in the population of Oryza sativa indica subspecies. The loci identified through GWAS explained ～ 36% of the phenotypic variance, on average. The peak signals at six loci were tied closely to previously identified genes. This study provides a fundamental resource for rice genetics research and breeding, and demonstrates that an approach integrating second-generation genome sequencing and GWAS can be used as a powerful complementary strategy to classical biparental cross-mapping for dissecting complex traits in rice.     

Genome-wide association study of flowering time and grain yield traits in a worldwide collection of rice germplasm

A high-density haplotype map recently enabled a genome-wide association study (GWAS) in a population of indica subspecies of Chinese rice landraces. Here we extend this methodology to a larger and more diverse sample of 950 worldwide rice varieties, including the Oryza sativa indica and Oryza sativa japonica subspecies, to perform an additional GWAS. We identified a total of 32 new loci associated with flowering time and with ten grain-related traits, indicating that the larger sample increased the power to detect trait-associated variants using GWAS. To characterize various alleles and complex genetic variation, we developed an analytical framework for haplotype-based de novo assembly of the low-coverage sequencing data in rice. We identified candidate genes for 18 associated loci through detailed annotation. This study shows that the integrated approach of sequence-based GWAS and functional genome annotation has the potential to match complex traits to their causal polymorphisms in rice.     

The genome of the extremophile crucifer Thellungiella parvula

Thellungiella parvula is related to Arabidopsis thaliana and is endemic to saline, resource-poor habitats, making it a model for the evolution of plant adaptation to extreme environments. Here we present the draft genome for this extremophile species. Exclusively by next generation sequencing, we obtained the de novo assembled genome in 1,496 gap-free contigs, closely approximating the estimated genome size of 140 Mb. We anchored these contigs to seven pseudo chromosomes without the use of maps. We show that short reads can be assembled to a near-complete chromosome level for a eukaryotic species lacking prior genetic information. The sequence identifies a number of tandem duplications that, by the nature of the duplicated genes, suggest a possible basis for T. parvula's extremophile lifestyle. Our results provide essential background for developing genomically influenced testable hypotheses for the evolution of environmental stress tolerance.