Hsp90 stress potentiates rapid cellular adaptation through induction of aneuploidy

Aneuploidy--the state of having uneven numbers of chromosomes--is a hallmark of cancer and a feature identified in yeast from diverse habitats. Recent studies have shown that aneuploidy is a form of large-effect mutation that is able to confer adaptive phenotypes under diverse stress conditions. Here we investigate whether pleiotropic stress could induce aneuploidy in budding yeast (Saccharomyces cerevisae). We show that whereas diverse stress conditions can induce an increase in chromosome instability, proteotoxic stress, caused by transient Hsp90 (also known as Hsp82 or Hsc82) inhibition or heat shock, markedly increased chromosome instability to produce a cell population with high karyotype diversity. The induced chromosome instability is linked to an evolutionarily conserved role for the Hsp90 chaperone complex in kinetochore assembly. Continued growth in the presence of an Hsp90 inhibitor resulted in the emergence of drug-resistant colonies with chromosome XV gain. This drug-resistance phenotype is a quantitative trait involving copy number increases of at least two genes located on chromosome XV. Short-term exposure to Hsp90 stress potentiated fast adaptation to unrelated cytotoxic compounds by means of different aneuploid chromosome stoichiometries. These findings demonstrate that aneuploidy is a form of stress-inducible mutation in eukaryotes, capable of fuelling rapid phenotypic evolution and drug resistance, and reveal a new role for Hsp90 in regulating the emergence of adaptive traits under stress.     

幼年小家鼠社会等级的预测：行为学指标和亲缘关系影响

野生断乳雄性小家鼠社会等级的形成无亲缘关系组早于亲缘关系组，判断未来优势和从属个体的行为学指标也因亲缘关系的影响而不同，在无亲缘关系组，未来优势鼠的嗅体和远处探究２种社会探究显著地高于未来从属鼠；在亲缘关系组，未来优势鼠直接和跳跃行为显著地多于未来从属鼠。     

A positive feedback mechanism governs the polarity and motion of motile cilia

Ciliated epithelia produce fluid flow in many organ systems, ranging from the respiratory tract where it clears mucus to the ventricles of the brain where it transports cerebrospinal fluid. Human diseases that disable ciliary flow, such as primary ciliary dyskinesia, can compromise organ function or the ability to resist pathogens, resulting in recurring respiratory infections, otitis, hydrocephaly and infertility. To create a ciliary flow, the cilia within each cell need to be polarized coordinately along the planar axis of the epithelium, but how polarity is established in any ciliated epithelia is not known. Here we analyse the developmental mechanisms that polarize cilia, using the ciliated cells in the developing Xenopus larval skin as a model system. We show that cilia acquire polarity through a sequence of events, beginning with a polar bias set by tissue patterning, followed by a refinement phase. Our results indicate that during refinement, fluid flow is both necessary and sufficient in determining cilia polarity. These findings reveal a novel mechanism in which tissue patterning coupled with fluid flow act in a positive feedback loop to direct the planar polarity of cilia.     

Novel recursive inference algorithm for discrete dynamic Bayesian networks

Dynamic Bayesian networks (DBNs) can effectively perform modeling and qualitative reasoning for many dynamic systems. However, most of its inference algorithms involve complicated graphical transformations that are hard to program and time-consuming to compute. This article proposes a new recursive inference algorithm, which is a purely numerical method derived from probability theory and the characteristics of Bayesian networks to do both on-line and off-line inferences in discrete DBNs. The most prominent advantages of this novel approach include: (1) it is an exact inference algorithm, thus its accuracy and stability can be guaranteed, (2) it avoids the complex graphical transformation so as to remarkably improve the inference speed, and (3) its concise recursive formulae facilitate programming of both forwards and backwards pass. All of these issues are verified by accurate mathematical derivation as well as a couple of application examples with comparison between the new algorithm and the two most prevailing inference approaches of discrete DBNs – the interface algorithm and the forwards–backwards algorithm.     

Mycophagy of red-backed voles, Clethrionomys californicus and C. gapperi

We examined stomach contents of 426 Clethrionomys , 217 C. californicus from western Oregon and 209 C. gapperi from widely scattered areas across North America. Clethrionomys californicus consumed fungi of 28 genera. Clethrionomys gapperi from the Rocky Mountains westward consumed fungi of 23 genera, whereas C. gapperi east of the Rocky Mountains consumed fungi of 7 genera. This study supports the conclusions of an earlier study, limited to Oregon and Washington, that food habits of C. californicus and C. gapperi are more closely related to habitat than to species or subspecies of vole.     

European earwig, Forficula auricularia L. (Dermaptera: Forficulidae), at the Hanford Reach National Monument, Washington State

The European earwig, Forficula auricularia L., was surveyed using pitfall traps at 3 sites at the Hanford Reach National Monument in south central Washington State. Pitfall traps were collected weekly from April 2002 through April 2003. The earwig was consistently taken during all months of the year at a disturbed, weedy site along the Columbia River (White Bluffs Ferry site) but was rare or not collected in 2 less-disturbed shrubsteppe habitats. Highest numbers occurred during April–May, when immatures accounted for the majority of the catch; immatures reached the adult stage during mid-July, and the species is univoltine at the site. Possible reasons why earwigs have not colonized the monument’s shrubsteppe habitat include the arid climate with lack of available moisture, especially for breeding purposes, and a lack of burrow sites. La tijereta Europea, Forficula auricularia L., fue estudiada usando trampas de caída en tres sitios del Hanford Reach National Monument en el sur del estado de Washington. Se colectaron los contenidos de las trampas de caída semanalmente desde abril de 2002 hasta abril de 2003. La tijereta apareció constantemente durante todos los meses del año en un sitio perturbado de vegetación herbácea en la orilla del Río Columbia (el lugar del antiguo transbordador White Bluffs) pero su colecta fue escasa o nula en dos hábitats de estepa arbustiva menos perturbados. Los mayores números ocurrieron durante abril y mayo cuando los organismos inmaduros representaron la mayoría de los especímenes capturados; éstos alcanzaron la etapa adulta a mediados de julio y la especie es univoltina en este sitio. Posibles causas de que las tijeretas no hayan colonizado el hábitat de estepa arbustiva del Monumento podrían incluir su clima árido carente de agua disponible, especialmente para la reproducción, y una falta de sitios para madrigueras.     

Recurrent DNA copy number variation in the laboratory mouse

Different species, populations and individuals vary considerably in the copy number of discrete segments of their genomes. The manner and frequency with which these genetic differences arise over generational time is not well understood. Taking advantage of divergence among lineages sharing a recent common ancestry, we have conducted a genome-wide analysis of spontaneous copy number variation (CNV) in the laboratory mouse. We used high-resolution microarrays to identify 38 CNVs among 14 colonies of the C57BL/6 strain spanning approximately 967 generations of inbreeding, and we examined these loci in 12 additional strains. It is clear from our results that many CNVs arise through a highly nonrandom process: 18 of 38 were the product of recurrent mutation, and rates of change varied roughly four orders of magnitude across different loci. Recurrent CNVs are found throughout the genome, affect 43 genes and fluctuate in copy number over mere hundreds of generations, observations that raise questions about their contribution to natural variation.