Finding finer functions for partially characterized proteins by protein-protein interaction networks

Based on high-throughput data, numerous algorithms have been designed to find functions of novel proteins. However, the effectiveness of such algorithms is currently limited by some fundamental factors, including (1) the low a-priori probability of novel proteins participating in a detailed function; (2) the huge false data present in high-throughput datasets; (3) the incomplete data coverage of functional classes; (4) the abundant but heterogeneous negative samples for training the algorithms; and (5) the lack of detailed functional knowledge for training algorithms. Here, for partially characterized proteins, we suggest an approach to finding their finer functions based on protein interaction sub-networks or gene expression patterns, defined in function-specific subspaces. The proposed approach can lessen the above-mentioned problems by properly defining the prediction range and functionally filtering the noisy data, and thus can efficiently find proteins’ novel functions. For thousands of yeast and human proteins partially characterized, it is able to reliably find their finer functions (e.g., the translational functions) with more than 90% precision. The predicted finer functions are highly valuable both for guiding the follow-up wet-lab validation and for providing the necessary data for training algorithms to learn other proteins.     

网络路由收敛性能测试研究

在网络建设和运行中,采用测试的方法对其性能进行评估对于网络的正常运营具有重要的意义.本文研究了网络路由收敛性能测试方法,为得到路由收敛性能指标,对OSPF和iBGP的路由收敛时间进行了测量.提出了一种简化的路由收敛时间测量方法,通过测量数据平面的传输性能指标,对路由控制平面的收敛时间进行估算.该方法对于测试设备要求不高,实施简单方便.采用该方法在CERNET2投入运营之前对其进行了路由性能测试,实验结果表明CERNET2在路由变化时具有较好的路由收敛性能.     

共轭斜量法在某些特征向量上收敛速度的估计

设 Ａ是对称正定矩阵，λ_1是 Ａ 的最大或最小特征值，χ_1是对应的特征向量．｛zk｝是用共轭斜量法求解方程组 Αχ＝ｂ时的近似解序列，ｅi＝Ａ～(_1)b-zi,本文给出了|x_1～Tei|较合理的上界估计式。从而为分析预处理共轭斜量法提供了进一步的理论基础。     

CGPSS-F仿真系统数据的采集与分析

本文详细地叙述了“医院门诊部为门诊病人服务的CGPSS-F仿真系统”数据采集与分析的方法.利用CGPSS-F仿真系统的驻留在队列中的实体数和资源处于繁忙状态的单元数,合理调整实体在系统的时间.根据资源容量的利用,实体排队的长度和实体在系统的时间,确定实用的系统参数.     

一种新的基于Kohonen网络的图像矢量量化

矢量量化是一种重要的数据压缩方法.本文利用Kohonen自组织映射神经网络进行矢量量化,首次较为详细地讨论了具体实现的步骤与细节,并在此基础上为改善边缘质量,提出一种基于Laplas算子检测边缘弓引导神经网络训练的方法,并通过实验证明其效果是明显的.     

并行算法软件库PASL

本文介绍了并行算法软件库ＰＡＳＬ。ＰＡＳＬ库运行在具有共享存储的多处理机上，它可以用于科学工程计算和仿真。     

鄂尔多斯盆地腹部下古生界天然气赋存系统研究

运用深盆气圈闭的基本原理，综合分析了鄂尔多斯盆地下古生界天然气赋存的基本地质因素，论证并提出了盆地腹部下古生界深盆气圈闭的新认识，并依据盆地地质构造特征将其进一步划分为：西部前渊拗陷型和中东部复式向斜型两大深盆气赋存系统．