Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index

Obesity is globally prevalent and highly heritable, but its underlying genetic factors remain largely elusive. To identify genetic loci for obesity susceptibility, we examined associations between body mass index and ～ 2.8 million SNPs in up to 123,865 individuals with targeted follow up of 42 SNPs in up to 125,931 additional individuals. We confirmed 14 known obesity susceptibility loci and identified 18 new loci associated with body mass index (P < 5 × 10??), one of which includes a copy number variant near GPRC5B. Some loci (at MC4R, POMC, SH2B1 and BDNF) map near key hypothalamic regulators of energy balance, and one of these loci is near GIPR, an incretin receptor. Furthermore, genes in other newly associated loci may provide new insights into human body weight regulation.     

Multiple apical plasma membrane constituents are associated with susceptibility to meconium ileus in individuals with cystic fibrosis

Variants associated with meconium ileus in cystic fibrosis were identified in 3,763 affected individuals by genome-wide association study (GWAS). Five SNPs at two loci near SLC6A14 at Xq23-24 (minimum P = 1.28 × 10(-12) at rs3788766) and SLC26A9 at 1q32.1 (minimum P = 9.88 × 10(-9) at rs4077468) accounted for ~5% of phenotypic variability and were replicated in an independent sample of affected individuals (n = 2,372; P = 0.001 and 0.0001, respectively). By incorporating the knowledge that disease-causing mutations in CFTR alter electrolyte and fluid flux across surface epithelium into a hypothesis-driven GWAS (GWAS-HD), we identified associations with the same SNPs in SLC6A14 and SLC26A9 and established evidence for the involvement of SNPs in a third solute carrier gene, SLC9A3. In addition, GWAS-HD provided evidence of association between meconium ileus and multiple genes encoding constituents of the apical plasma membrane where CFTR resides (P = 0.0002; testing of 155 apical membrane genes jointly and in replication, P = 0.022). These findings suggest that modulating activities of apical membrane constituents could complement current therapeutic paradigms for cystic fibrosis.     

Microenvironment and nest site selection by ring-necked pheasants in Utah

Vegetative and atmospheric parameters were evaluated at 16 different nest sites of ring-necked pheasants in Utah County, Utah, to determine which parameters are influential in the nest site selection process. These data indicate that total vegetative ground cover, high amounts of cover immediately surrounding the nest cavity, and drying power of the air are the parameters most influential in nest site selection.     

A genome-wide association study identifies colorectal cancer susceptibility loci on chromosomes 10p14 and 8q23.3

To identify colorectal cancer (CRC) susceptibility alleles, we conducted a genome-wide association study. In phase 1, we genotyped 550,163 tagSNPs in 940 familial colorectal tumor cases (627 CRC, 313 high-risk adenoma) and 965 controls. In phase 2, we genotyped 42,708 selected SNPs in 2,873 CRC cases and 2,871 controls. In phase 3, we evaluated 11 SNPs showing association at P < 10(-4) in a joint analysis of phases 1 and 2 in 4,287 CRC cases and 3,743 controls. Two SNPs were taken forward to phase 4 genotyping (10,731 CRC cases and 10,961 controls from eight centers). In addition to the previously reported 8q24, 15q13 and 18q21 CRC risk loci, we identified two previously unreported associations: rs10795668, located at 10p14 (P = 2.5 x 10(-13) overall; P = 6.9 x 10(-12) replication), and rs16892766, at 8q23.3 (P = 3.3 x 10(-18) overall; P = 9.6 x 10(-17) replication), which tags a plausible causative gene, EIF3H. These data provide further evidence for the 'common-disease common-variant' model of CRC predisposition.     

Cooling of the Earth and core formation after the giant impact

Kelvin calculated the age of the Earth to be about 24 million years by assuming conductive cooling from being fully molten to its current state. Although simplistic, his result is interesting in the context of the dramatic cooling that took place after the putative Moon-forming giant impact, which contributed the final approximately 10 per cent of the Earth's mass. The rate of accretion and core segregation on Earth as deduced from the U-Pb system is much slower than that obtained from Hf-W systematics, and implies substantial accretion after the Moon-forming impact, which occurred 45 +/- 5 Myr after the beginning of the Solar System. Here we propose an explanation for the two timescales. We suggest that the Hf-W timescale reflects the principal phase of core-formation before the giant impact. Crystallization of silicate perovskite in the lower mantle during this phase produced Fe(3+), which was released during the giant impact, and this oxidation resulted in late segregation of sulphur-rich metal into which Pb dissolved readily, setting the younger U-Pb age of the Earth. Separation of the latter metal then occurred 30 +/- 10 Myr after the Moon-forming impact. Over this time span, in surprising agreement with Kelvin's result, the Earth cooled by about 4,000 K in returning from a fully molten to a partially crystalline state.