Exome sequencing of liver fluke-associated cholangiocarcinoma

Opisthorchis viverrini-related cholangiocarcinoma (CCA), a fatal bile duct cancer, is a major public health concern in areas endemic for this parasite. We report here whole-exome sequencing of eight O. viverrini-related tumors and matched normal tissue. We identified and validated 206 somatic mutations in 187 genes using Sanger sequencing and selected 15 genes for mutation prevalence screening in an additional 46 individuals with CCA (cases). In addition to the known cancer-related genes TP53 (mutated in 44.4% of cases), KRAS (16.7%) and SMAD4 (16.7%), we identified somatic mutations in 10 newly implicated genes in 14.8-3.7% of cases. These included inactivating mutations in MLL3 (in 14.8% of cases), ROBO2 (9.3%), RNF43 (9.3%) and PEG3 (5.6%), and activating mutations in the GNAS oncogene (9.3%). These genes have functions that can be broadly grouped into three biological classes: (i) deactivation of histone modifiers, (ii) activation of G protein signaling and (iii) loss of genome stability. This study provides insight into the mutational landscape contributing to O. viverrini-related CCA.     

Gene polymorphism in Netherton and common atopic disease.

Atopic dermatitis (AD) and asthma are characterized by IgE-mediated atopic (allergic) responses to common proteins (allergens), many of which are proteinases. Loci influencing atopy have been localized to a number of chromosomal regions, including the chromosome 5q31 cytokine cluster. Netherton disease is a rare recessive skin disorder in which atopy is a universal accompaniment. The gene underlying Netherton disease (SPINK5) encodes a 15-domain serine proteinase inhibitor (LEKTI) which is expressed in epithelial and mucosal surfaces and in the thymus. We have identified six coding polymorphisms in SPINK5 (Table 1) and found that a Glu420-->Lys variant shows significant association with atopy and AD in two independent panels of families. Our results implicate a previously unrecognized pathway for the development of common allergic illnesses.     

对一种快速双重指数模算法的复杂度研究

最近提出了一种采用标准符号数二进制码(canonic signed-digit binary representation,CSDBR)来计算AXBY(modN)的快速双重指数模算法.该算法声明当指数的长度为k时,该算法平均仅需要1.306k次模乘.由于已知的此类算法至少需要1.503k次模乘,该算法具有明显的性能优势.然而,无论是该算法的提出者还是其他研究者均没有给出正确的复杂度分析.本文通过利用马尔科夫链模型对该算法进行正式的复杂度研究并进行一定规模的统计实验后证实,实际上该算法平均需要1.556k次模乘.这项研究的意义在于揭示到目前为止,基于标准符号数位码的双重指数模算法的最高性能仍然无法降低到1.5k次模乘以下.     

光电子能谱的谱峰分解

为了从电子能谱图中得到准确的峰位置(结合能),必须进行谱峰分解,一种简单有效的分解办法,我们采用Powell方法求解拟合曲线与实验曲线偏差的极小值,用BASIC语言编制了适合于实验室用的谱峰分解程序,在普通微型计算机分解谱峰。经过实践应用,方法简便,效果良好,可供实验室数据分析使用。     

原子吸收分光光度法测定胃粘膜中的Zn/Cu值

本文报导话检胃粘膜样品中痕量铜和锌的原子吸收法测定。采用了微痕量分析技术;用硝酸—过氧化氢硝解试样;石墨炉原子吸收法测定铜;火焰原子吸收法测定锌。样品的检出跟:铜1.7μg/g;锌8.0μg/g,回收率和精密度,可以满足微痕量分析的要求。本法快速简单,适用于人体组织活检样品中Zn/Cu值的测定,为临床诊断提供数据。     

改善苎麻及其混纺纱弹性研究

本文主要为了改善苎麻纱和麻棉纱的弹性,对苎麻纱、麻棉纱和棉纱进行了碱处理。并根据前人所做的工作,即有张力状态下碱处理和松弛状态下碱处理,其纱线性能存在较大差异,因而本文着重考虑在不同张力状态下进行碱处理,研究结果表明,采用低张力进行碱处理。其苎麻纱和麻棉纱的最大变形能力即断裂伸长显著增加,初始弹性模量显著下降,纱线变形恢复能力显著提高。