A physical map of the human genome

The human genome is by far the largest genome to be sequenced, and its size and complexity present many challenges for sequence assembly. The International Human Genome Sequencing Consortium constructed a map of the whole genome to enable the selection of clones for sequencing and for the accurate assembly of the genome sequence. Here we report the construction of the whole-genome bacterial artificial chromosome (BAC) map and its integration with previous landmark maps and information from mapping efforts focused on specific chromosomal regions. We also describe the integration of sequence data with the map.     

A physical map of the chicken genome

Strategies for assembling large, complex genomes have evolved to include a combination of whole-genome shotgun sequencing and hierarchal map-assisted sequencing. Whole-genome maps of all types can aid genome assemblies, generally starting with low-resolution cytogenetic maps and ending with the highest resolution of sequence. Fingerprint clone maps are based upon complete restriction enzyme digests of clones representative of the target genome, and ultimately comprise a near-contiguous path of clones across the genome. Such clone-based maps are used to validate sequence assembly order, supply long-range linking information for assembled sequences, anchor sequences to the genetic map and provide templates for closing gaps. Fingerprint maps are also a critical resource for subsequent functional genomic studies, because they provide a redundant and ordered sampling of the genome with clones. In an accompanying paper we describe the draft genome sequence of the chicken, Gallus gallus, the first species sequenced that is both a model organism and a global food source. Here we present a clone-based physical map of the chicken genome at 20-fold coverage, containing 260 contigs of overlapping clones. This map represents approximately 91% of the chicken genome and enables identification of chicken clones aligned to positions in other sequenced genomes.     

Regulation of p53 activity through lysine methylation

p53 is a tumour suppressor that regulates the cellular response to genotoxic stresses. p53 is a short-lived protein and its activity is regulated mostly by stabilization via different post-translational modifications. Here we report a novel mechanism of p53 regulation through lysine methylation by Set9 methyltransferase. Set9 specifically methylates p53 at one residue within the carboxyl-terminus regulatory region. Methylated p53 is restricted to the nucleus and the modification positively affects its stability. Set9 regulates the expression of p53 target genes in a manner dependent on the p53-methylation site. The crystal structure of a ternary complex of Set9 with a p53 peptide and the cofactor product S-adenosyl-l-homocysteine (AdoHcy) provides the molecular basis for recognition of p53 by this lysine methyltransferase.     

Spatial patterns in species distributions reveal biodiversity change

Interpretation of global biodiversity change is hampered by a lack of information on the historical status of most species in most parts of the world. Here we show that declines and increases can be deduced from current species distributions alone, using spatial patterns of occupancy combined with distribution size. Declining species show sparse, fragmented distributions for their distribution size, reflecting the extinction process; expanding species show denser, more aggregated distributions, reflecting colonization. Past distribution size changes for British butterflies were deduced successfully from current distributions, and former distributions had some power to predict future change. What is more, the relationship between distribution pattern and change in British butterflies independently predicted distribution change for butterfly species in Flanders, Belgium, and distribution change in British rare plant species is similarly related to spatial distribution pattern. This link between current distribution patterns and processes of distribution change could be used to assess relative levels of threat facing different species, even for regions and taxa lacking detailed historical and ecological information.     

Analyses on the climate change responses over China under SRES B2 scenario using PRECIS

The global climate has been altered by the anthro- pogenic forcing due to greenhouse gases (GHGs) emis- sions. It is pointed out in the Third Assessments Report (TAR)[1] of Intergovernmental Panel on Climate Change (IPCC) in 2001 that over the 20th centur…     

The cloacal gland complex of the Japanese quail

Résumé Chez les cailles japonaises, le complexe glandulaire du cloaque est en fait localisé dans la lèvre dorsale du cloaque et non de l'anus. Il existe un complexe glandulaire similaire et très petit du côté ventral. La glande active se colore intensément avec le réactif périodique «acide Schiff», avec la fuchsine aldéhyde, avec le bleu d'alciane et métachromatiquement avec le bleu de toluidine. Ceci indique la présence d'une sécrétion de glycomucoprotéines. Le liquide transparent sécrété est transformé en masse blanche mousseuse au contact des bactériesE. coli etProteus mirabilis, présentes en quantités équivalentes dans le proctodeum. Les gaz émis consistent probablement en H₂ et CO₂, ce dernier peut agir comme tampon et stabiliser le pH de la sécrétion autour de la valeur 6,5.

---

---

This work was supported by U.S.P.H.S. grant No. ES 00054, Support for Toxicology Center, and by NASA research grant No. NGR 05-004-028.