Phase-slip-induced dissipation in an atomic Bose-Hubbard system

Phase-slips control dissipation in many bosonic systems, determining the critical velocity of superfluid helium and the generation of resistance in thin superconducting wires. Technological interest has been largely motivated by applications involving nanoscale superconducting circuit elements, such as standards based on quantum phase-slip junctions. Although phase slips caused by thermal fluctuations at high temperatures are well understood, controversy remains over the role of phase slips in small-scale superconductors--in solids, problems such as uncontrolled noise sources and disorder complicate their study and application. Here we show that phase slips can lead to dissipation in a clean and well-characterized Bose-Hubbard system, by experimentally studying the transport of ultracold atoms trapped in an optical lattice. In contrast to previous work, we explore a low-velocity regime described by the three-dimensional Bose-Hubbard model that is unaffected by instabilities, and we measure the effect of temperature on the dissipation strength. The damping rate of atomic motion (the analogue of electrical resistance in a solid) in the confining parabolic potential is well fitted by a model that includes finite damping at zero temperature. The low-temperature behaviour is consistent with the theory of quantum tunnelling of phase slips, whereas at higher temperatures a crossover consistent with a transition to thermal activation of phase slips is evident. Motion-induced features reminiscent of vortices and vortex rings associated with phase slips are also observed in time-of-flight imaging. These results clarify the role of phase slips in superfluid systems. They may also be of relevance in understanding the source of metallic phases observed in thin films, or serve as a test bed for theories of bosonic dissipation based upon variants of the Bose-Hubbard model.     

Non-random segregation of sister chromosomes in Escherichia coli

It has long been known that the 5' to 3' polarity of DNA synthesis results in both a leading and lagging strand at all replication forks. Until now, however, there has been no evidence that leading or lagging strands are spatially organized in any way within a cell. Here we show that chromosome segregation in Escherichia coli is not random but is driven in a manner that results in the leading and lagging strands being addressed to particular cellular destinations. These destinations are consistent with the known patterns of chromosome segregation. Our work demonstrates a new level of organization relating to the replication and segregation of the E. coli chromosome.     

Direct observation of the mechanochemical coupling in myosin Va during processive movement

Myosin Va transports intracellular cargoes along actin filaments in cells. This processive, two-headed motor takes multiple 36-nm steps in which the two heads swing forward alternately towards the barbed end of actin driven by ATP hydrolysis. The ability of myosin Va to move processively is a function of its long lever arm, the high duty ratio of its kinetic cycle and the gating of the kinetics between the two heads such that ADP release from the lead head is greatly retarded. Mechanical studies at the multiple- and the single-molecule level suggest that there is tight coupling (that is, one ATP is hydrolysed per power stroke), but this has not been directly demonstrated. We therefore investigated the coordination between the ATPase mechanism of the two heads of myosin Va and directly visualized the binding and dissociation of single fluorescently labelled nucleotide molecules, while simultaneously observing the stepping motion of the fluorescently labelled myosin Va as it moved along an actin filament. Here we show that preferential ADP dissociation from the trail head of mouse myosin Va is followed by ATP binding and a synchronous 36-nm step. Even at low ATP concentrations, the myosin Va molecule retained at least one nucleotide (ADP in the lead head position) when moving. Thus, we directly demonstrate tight coupling between myosin Va movement and the binding and dissociation of nucleotide by simultaneously imaging with near nanometre precision.     

Simulations of the formation, evolution and clustering of galaxies and quasars

The cold dark matter model has become the leading theoretical picture for the formation of structure in the Universe. This model, together with the theory of cosmic inflation, makes a clear prediction for the initial conditions for structure formation and predicts that structures grow hierarchically through gravitational instability. Testing this model requires that the precise measurements delivered by galaxy surveys can be compared to robust and equally precise theoretical calculations. Here we present a simulation of the growth of dark matter structure using 2,160(3) particles, following them from redshift z = 127 to the present in a cube-shaped region 2.230 billion lightyears on a side. In postprocessing, we also follow the formation and evolution of the galaxies and quasars. We show that baryon-induced features in the initial conditions of the Universe are reflected in distorted form in the low-redshift galaxy distribution, an effect that can be used to constrain the nature of dark energy with future generations of observational surveys of galaxies.     

Experience in the Practice of One Tradition of Multimethodology

This paper explores issues arising from the growing experience in the practice of just one of the traditions of multimethodology, namely that associated with a set of theoretical principles labeled pragmatic pluralism, and a methodological framework which is being developed to put these into action, namely, PANDA (participatory appraisal of needs and the development of action). The paper begins with a short historical introduction to the tradition of multimethodology under consideration; Section 2 then briefly describes some of the main features and principles involved in the PANDA framework. We then present three short case studies to illustrate different features of PANDA in action. The concluding section reflects on the issues that arise from the use of PANDA and discusses our future agenda for its development.