Design principles of a bacterial signalling network

Cellular biochemical networks have to function in a noisy environment using imperfect components. In particular, networks involved in gene regulation or signal transduction allow only for small output tolerances, and the underlying network structures can be expected to have undergone evolution for inherent robustness against perturbations. Here we combine theoretical and experimental analyses to investigate an optimal design for the signalling network of bacterial chemotaxis, one of the most thoroughly studied signalling networks in biology. We experimentally determine the extent of intercellular variations in the expression levels of chemotaxis proteins and use computer simulations to quantify the robustness of several hypothetical chemotaxis pathway topologies to such gene expression noise. We demonstrate that among these topologies the experimentally established chemotaxis network of Escherichia coli has the smallest sufficiently robust network structure, allowing accurate chemotactic response for almost all individuals within a population. Our results suggest that this pathway has evolved to show an optimal chemotactic performance while minimizing the cost of resources associated with high levels of protein expression. Moreover, the underlying topological design principles compensating for intercellular variations seem to be highly conserved among bacterial chemosensory systems.     

The formation of two independent notochords in an explant taken from the dorsal blastoporal area of an early gastrula of amphibia

Zusammenfassung Stücke aus der dorsalen Randzone der frühen Gastrula vonHynobius nebulosus wurden in Holtfreterscher Lösung auf Kollodiummembranen gezüchtet. In dreieckigen Explantaten entstehen öfters zwei Chordastränge, während in viereckigen Explantaten stets nur ein Chordastrang gebildet wird. Diese Tatsachen weisen auf die Möglichkeit hin, dass Gestaltungsbewegungen des Explantates bei der Determination der Chordaanlage eine wichtige Rolle spielen.     

A complete insect from the Late Devonian period

After terrestrialization, the diversification of arthropods and vertebrates is thought to have occurred in two distinct phases, the first between the Silurian and the Frasnian stages (Late Devonian period) (425-385?million years (Myr) ago), and the second characterized by the emergence of numerous new major taxa, during the Late Carboniferous period (after 345?Myr ago). These two diversification periods bracket the depauperate vertebrate Romer's gap (360-345?Myr ago) and arthropod gap (385-325?Myr ago), which could be due to preservational artefact. Although a recent molecular dating has given an age of 390?Myr for the Holometabola, the record of hexapods during the Early-Middle Devonian (411.5-391?Myr ago, Pragian to Givetian stages) is exceptionally sparse and based on fragmentary remains, which hinders the timing of this diversification. Indeed, although Devonian Archaeognatha are problematic, the Pragian of Scotland has given some Collembola and the incomplete insect Rhyniognatha, with its diagnostic dicondylic, metapterygotan mandibles. The oldest, definitively winged insects are from the Serpukhovian stage (latest Early Carboniferous period). Here we report the first complete Late Devonian insect, which was probably a terrestrial species. Its 'orthopteroid' mandibles are of an omnivorous type, clearly not modified for a solely carnivorous diet. This discovery narrows the 45-Myr gap in the fossil record of Hexapoda, and demonstrates further a first Devonian phase of diversification for the Hexapoda, as in vertebrates, and suggests that the Pterygota diversified before and during Romer's gap.     

An RNA gene expressed during cortical development evolved rapidly in humans

The developmental and evolutionary mechanisms behind the emergence of human-specific brain features remain largely unknown. However, the recent ability to compare our genome to that of our closest relative, the chimpanzee, provides new avenues to link genetic and phenotypic changes in the evolution of the human brain. We devised a ranking of regions in the human genome that show significant evolutionary acceleration. Here we report that the most dramatic of these 'human accelerated regions', HAR1, is part of a novel RNA gene (HAR1F) that is expressed specifically in Cajal-Retzius neurons in the developing human neocortex from 7 to 19 gestational weeks, a crucial period for cortical neuron specification and migration. HAR1F is co-expressed with reelin, a product of Cajal-Retzius neurons that is of fundamental importance in specifying the six-layer structure of the human cortex. HAR1 and the other human accelerated regions provide new candidates in the search for uniquely human biology.     

Lunar activity from recent gas release

Samples of material returned from the Moon have established that widespread lunar volcanism ceased about 3.2 Gyr ago. Crater statistics and degradation models indicate that last-gasp eruptions of thin basalt flows continued until less than 1.0 Gyr ago, but the Moon is now considered to be unaffected by internal processes today, other than weak tidally driven moonquakes and young fault systems. It is therefore widely assumed that only impact craters have reshaped the lunar landscape over the past billion years. Here we report that patches of the lunar regolith in the Ina structure were recently removed. The preservation state of relief, the number of superimposed small craters, and the 'freshness' (spectral maturity) of the regolith together indicate that features within this structure must be as young as 10 Myr, and perhaps are still forming today. We propose that these features result from recent, episodic out-gassing from deep within the Moon. Such out-gassing probably contributed to the radiogenic gases detected during past lunar missions. Future monitoring (including Earth-based observations) should reveal the composition of the gas, yielding important clues to volatiles archived at great depth over the past 4-4.5 Gyr.     

Multiobjective routing in multiservice MPLS networks with traffic splitting — A network flow approach

A multiobjective routing model for Multiprotocol Label Switching networks with multiple service types and traffic splitting is presented in this paper.The routing problem is formulated as a multiobjective mixed-integer program,where the considered objectives are the minimization of the bandwidth routing cost and the minimization of the load cost in the network links with a constraint on the maximal splitting of traffic trunks.Two different exact methods are developed for solving the formulated problem,one based on the classical constraint method and another based on a modified constraint method.Avery extensive experimental study,with results on network performance measures in various reference test networks and in randomly generated networks,is also presented and its results are discussed.     

Induced and heavy aggregation operators with distance measures

This paper introduces a new aggregation model by using induced and heavy aggregation operators in distances measures such as the Hamming distance. It is called the induced heavy ordered weighted averaging (OWA) distance (IHOWAD) operator. This paper studies some of its main properties and a wide range of particular cases such as the induced heavy OWA (IHOWA) operator, the induced OWA distance (IOWAD) operator and the heavy OWA distance (HOWAD) operator. This approach is generalized by using generalized and quasi-arithmetic means obtaining the induced generalized IHOWAD (IGHOWAD) operator and the Quasi-IHOWAD operator. An application of the new approach in a decision making problem regarding the selection of strategies is developed.