Patterns of somatic mutation in human cancer genomes

Cancers arise owing to mutations in a subset of genes that confer growth advantage. The availability of the human genome sequence led us to propose that systematic resequencing of cancer genomes for mutations would lead to the discovery of many additional cancer genes. Here we report more than 1,000 somatic mutations found in 274 megabases (Mb) of DNA corresponding to the coding exons of 518 protein kinase genes in 210 diverse human cancers. There was substantial variation in the number and pattern of mutations in individual cancers reflecting different exposures, DNA repair defects and cellular origins. Most somatic mutations are likely to be 'passengers' that do not contribute to oncogenesis. However, there was evidence for 'driver' mutations contributing to the development of the cancers studied in approximately 120 genes. Systematic sequencing of cancer genomes therefore reveals the evolutionary diversity of cancers and implicates a larger repertoire of cancer genes than previously anticipated.     

Transport and diffusion of Tau protein in neurons

In highly polarized and elongated cells such as neurons, Tau protein must enter and move down the axon to fulfill its biological task of stabilizing axonal microtubules. Therefore, cellular systems for distributing Tau molecules are needed. This review discusses different mechanisms that have been proposed to contribute to the dispersion of Tau molecules in neurons. They include (1) directed transport along microtubules as cargo of tubulin complexes and/or motor proteins, (2) diffusion, either through the cytosolic space or along microtubules, and (3) mRNA-based mechanisms such as transport of Tau mRNA into axons and local translation. Diffusion along the microtubule lattice or through the cytosol appear to be the major mechanisms for axonal distribution of Tau protein in the short-to-intermediate range over distances of up to a millimetre. The high diffusion coefficients ensure that Tau can distribute evenly throughout the axonal volume as well as along microtubules. Motor protein-dependent transport of Tau dominates over longer distances and time scales. At low near-physiological levels, Tau is co-transported along with short microtubules from cell bodies into axons by cytoplasmic dynein and kinesin family members at rates of slow axonal transport.     

Simulation modeling of American marten ( Martes americana ) populations: vulnerability to extinction

American marten ( Martes Americana ) are medium-sized mammalian carnivores inhabiting forest communities across northern North America. Martens are susceptible to local extinction from habitat alterations, trapping, and other factors. We (RCL) developed a population model called VORTEX to estimate extinction probabilities for marten populations as a management tool. The model permits managers to simulate various levels of timber harvesting, commercial trapping, and other factors to estimate their effects on marten populations. This paper describes this model and illustrates its benefits by using marten data from the Greater Yellowstone Ecosystem of northwestern Wyoming. Results are preliminary. Populations of 50 and 100 martens were simulated. The most optimistic scenario with populations of 100 individuals, no trapping, no logging, and no migrants showed a probability (66%) of surviving 100 years. Extinction probabilities were sensitive to immigration and emigration rates. Numerous scenarios were simulated and showed a range of results. Results of population viability analysis can be translated into area requirements if densities are known or can be estimated. In turn, various habitat patches and interconnecting corridors can be examined for their ability to support viable marten populations. Population modeling is invaluable to ""adaptive management"" of martens as well as other species.     

On the structure and funtion of white-tailed prairie dog burrows

The architecture of burrows of the white-tailed prairie dog ( Cynomys leucurus ) is poorly known. For this reason and for comparative purposes, one recenlty active burrow of this species was excavated in southern Montana; the detailed methodology is described. Data were compiled on the dimensions of 29.3 m of excavated passages, and interpretations of several features are discussed. A ""turning bay,"" sleeping quarters, two hibernacula, and a maternity area are described, the last feature for the first time in print. In addition, we report Cynomys using their teeth to dig, also for the first time. Further, an inadvertent remodeling of the burrows is ascribed to normal animal traffic and appears to confirm a prediction based on late Pleistocene fossil burrows in Alberta.     

Burrows of the sagebrush vole ( Lemmiscus curtatus ) in southeastern Idaho

Normal 0 false false false EN-US X-NONE X-NONE MicrosoftInternetExplorer4 /* Style Definitions */ table.MsoNormalTable {mso-style-name:"Table Normal"; mso-tstyle-rowband-size:0; mso-tstyle-colband-size:0; mso-style-noshow:yes; mso-style-priority:99; mso-style-qformat:yes; mso-style-parent:""; mso-padding-alt:0in 5.4pt 0in 5.4pt; mso-para-margin:0in; mso-para-margin-bottom:.0001pt; mso-pagination:widow-orphan; font-size:11.0pt; font-family:"Calibri","sans-serif"; mso-ascii-font-family:Calibri; mso-ascii-theme-font:minor-latin; mso-fareast-font-family:"Times New Roman"; mso-fareast-theme-font:minor-fareast; mso-hansi-font-family:Calibri; mso-hansi-theme-font:minor-latin; mso-bidi-font-family:"Times New Roman"; mso-bidi-theme-font:minor-bidi;} Burrows of the sagebrush vole ( Lemmiscus curtatus ) were analyzed by injecting them with expanding polyurethane foam. Average mean depth ± 1 SE of four burrows was 12.5 ± 2.6 cm. Tunnels were wider than high and flat on the bottom. Three of four burrows were nearly linear, with an average of five entrances. Burrows usually contained one nest made of Artemisia tridentata bark. No middens or communal nests were found. The burrow structure in sagebrush habitat suggests that sagebrush voles occur singly or in pairs rather than in colonies.     

Bald eagle winter survey in the Snake River Canyon, Wyoming

A 5-year winter bald eagle survey was conducted along 22 km of the Snake River Canyon in northwestern Wyoming. Surveys were done on 94 days requiring 1,414 hrs and 1,888 km driving. In all, 220 (85 percent adults) bald eagles were seen. Seventy-seven percent of all eagles were perching, 15 percent were flying, 4 percent were feeding on road-killed mule deer, and 4 percent were flying low over water. Perching sites were identified as 32 percent cottonwoods, 30 percent spruce, 17 percent Douglas-fir, and 22 percent other. Eagles were somewhat clumped in distribution.     

Short-term effects of logging on red-backed voles and deer mice

Clearcutting and selective logging effects on red-backed voles ( Clethrionomys gapperi ) and deer mice ( Peromyscus maniculatus ) were studied (September–November, 1975; June–October, 1976) in Bridger-Teton National Forest, Wyoming. Five selective cuts (total 137 ha) removed 57 percent (range 34–74 percent) of the trees. One clearcut (9.6 ha) eliminate 84 percent of the trees. Soils remained mesic in selective cuts, but became xeric in the clearcut. Snap-trapping indicated that voles were most abundant on the unlogged and selectively cut mesic sites (76 percent of 408 captures), whereas deer mice were more common on the xeric clearcut (80 percent of 60 captures). Species composition remained unchanged on selective cuts following logging (77 percent voles of 256 captures), but changed from predominantly voles to mostly deer mice (80 percent of 60 captures) in the clearcut. Intraspecific age and sex ratios, litter sizes, and morphological measurements were compared between logged and unlogged areas.     

Impacts of intraseasonal oscillation on the onset and interannual variation of the Indian summer monsoon

The role of the intraseasonal oscillation (ISO) on the seasonal and interannual variations of the Indian summer monsoon is investigated based on the analysis of observational data. It is shown that the ISO significantly contributes to the establishment of low-level westerlies during the monsoon onset and developing periods. The effect of the ISO on the annual cycle of the monsoon is through nonlinear eddy momentum transport. On the interannual timescale, the Indian summer monsoon rainfall exhibits a significant out-of-phase relationship with the ISO intensity over the Indian monsoon region. In strong ISO years it appears the weak monsoon when there is an abnormal high over the India subcontinent in the lower troposphere. In weak ISO years there exists an abnormal low and the strong monsoon appears. Supported by National Basic Research Program of China (Grant No. 2006CB403602), National Natural Science Foundation of China (Grant Nos. 40225012 and 40775039) and Chinese COPES Program (Grant No. GYHY200706005)     

Action Research in Management—Ethical Dilemmas

This paper discusses the application of the guiding ethical principles for the conduct of research involving human subjects in an action research project in a membership-based community psychiatric disability organization. Action research is a collaborative process of critical inquiry between the researcher and the people in the situation, in this case the management executive. The relationship between the researcher and manager participants in a long-term action research project gives rise to ethical dilemmas related to participant selection and voluntary participation, informed consent, decision making, anonymity and confidentiality, conflicting and different needs. The process and strategies implemented to address them are discussed.