Ultra-high suppression microwave photonic bandstop filters

A bandstop radio frequency （RF） filter can enhance the capabilities of RF communication systems by removing unwanted signal components such as distortion, or interference. In modem cognitive radio systems, frequency agile filters are desired to block interferers with dynamically changing frequencies and powers. These filters should be tunable over a broad frequency range, and they should be capable of suppressing very strong signals with a high resolution. To simultaneously meet these requirements with traditional RF filters are highly chal- lenging. Microwave photonic （MWP）, a technology that primary deals with the generation, distribution, and processing of high speed RF signals using photonic techniques and components, is promising for creating frequency agile RF filters. However, traditional MWP filters are lacking the high resolution and peak suppression exhibited by state-of-the-art RF electrical filters. We recently introduced a new class of MWP notch filter which is free from this limitation. This scheme allowed the creation of anomalously high suppression MWP notch filter from virtually any kind of optical resonance, irrespective of its type （gain or absorp tion）, or its magnitude. This enabled, for the first time, simultaneous optimization of the MWP filter resolution, peak attenuation, and frequency tuning range. In this paper, we present the analysis of notch filter response creation using the novel sideband processing technique. We then show the applicability of this technique to a wide range of optical filters. We compare simulated and experimental results of the notch filter response created using three types of optical filter commonly used in MWP signal processing, namely stimulated Brillouin scattering （SBS）, an integrated optical ring resonator （ORR）, and a phase-shifted fiber Bragg-grating （FBG）.     

Haematopoietic stem cells do not asymmetrically segregate chromosomes or retain BrdU

Stem cells are proposed to segregate chromosomes asymmetrically during self-renewing divisions so that older ('immortal') DNA strands are retained in daughter stem cells whereas newly synthesized strands segregate to differentiating cells. Stem cells are also proposed to retain DNA labels, such as 5-bromo-2-deoxyuridine (BrdU), either because they segregate chromosomes asymmetrically or because they divide slowly. However, the purity of stem cells among BrdU-label-retaining cells has not been documented in any tissue, and the 'immortal strand hypothesis' has not been tested in a system with definitive stem cell markers. Here we tested these hypotheses in haematopoietic stem cells (HSCs), which can be highly purified using well characterized markers. We administered BrdU to newborn mice, mice treated with cyclophosphamide and granulocyte colony-stimulating factor, and normal adult mice for 4 to 10 days, followed by 70 days without BrdU. In each case, less than 6% of HSCs retained BrdU and less than 0.5% of all BrdU-retaining haematopoietic cells were HSCs, revealing that BrdU has poor specificity and poor sensitivity as an HSC marker. Sequential administration of 5-chloro-2-deoxyuridine and 5-iodo-2-deoxyuridine indicated that all HSCs segregate their chromosomes randomly. Division of individual HSCs in culture revealed no asymmetric segregation of the label. Thus, HSCs cannot be identified on the basis of BrdU-label retention and do not retain older DNA strands during division, indicating that these are not general properties of stem cells.     

Such small hands: the roles of centrins/caltractins in the centriole and in genome maintenance

Centrins are small, highly conserved members of the EF-hand superfamily of calcium-binding proteins that are found throughout eukaryotes. They play a major role in ensuring the duplication and appropriate functioning of the ciliary basal bodies in ciliated cells. They have also been localised to the centrosome, which is the major microtubule organising centre in animal somatic cells. We describe the identification, cloning and characterisation of centrins in multiple eukaryotic species. Although centrins have been implicated in centriole biogenesis, recent results have indicated that centrosome duplication can, in fact, occur in the absence of centrins. We discuss these data and the non-centrosomal functions that are emerging for the centrins. In particular, we discuss the involvement of centrins in nucleotide excision repair, a process that repairs the DNA lesions that are induced primarily by ultraviolet irradiation. We discuss how centrin may be involved in these diverse processes and contribute to nuclear and cytoplasmic events.     

Behavioral activities and breeding success of Willow Flycatchers in the Sierra Nevada

Observing survival and how individuals allocate time can provide insight into a species' ability to tolerate environmental constraints. We studied the Willow Flycatcher ( Empidonax trallii ) in the Sierra Nevada to determine if there were behavioral differences between pairs that successfully produced offspring and those that did not. This information will advance understanding of why these birds are declining in the Sierra Nevada and contribute to recommendations that may help to conserve them. We studied birds in 13 meadows in 2000 and 2001 using continuous focal-animal observations. Of the 43 territories we observed, 11 were occupied by males who never paired with a female, leaving 32 pairs for analysis. Of the 32 pairs, 13 were successful at breeding on their 1st attempt, and 9 pairs failed at their initial try but were successful on their 2nd breeding attempt. Throughout the breeding season, Willow Flycatchers spent 77%-78% of the day loafing during territory establishment and nest building, and loafing reached a low of 49% of the time budget during the nestling stage. Unsuccessful pairs spent on average 34% more time perching than their successful counterparts, while successful pairs spent on average 48% more of their time on the nest than unsuccessful pairs. Willow Flycatchers doubled the time spent foraging during the nestling phase because they had to meet the daily intake requirements for their young and themselves. Our results suggest that birds that spent more time on the nest and less time vocalizing had a significantly higher probability of successfully producing young because they were able to protect nests from predators, nest parasites, and inclement weather.     

Reproductive ecology of Dusky Flycatchers in montane meadows of the central Sierra Nevada

Avian species with expansive ranges or those that occupy more than one vegetative association may vary in aspects of their life histories across their ranges. The distribution of Dusky Flycatchers encompasses a variety of vegetative associations, including riparian communities. However, much of the literature on this species details studies conducted in upland areas. Our objectives were to describe the breeding ecology and fecundity of Dusky Flycatchers nesting in montane meadows of the central Sierra Nevada, California. We monitored 36 territories and located 37 Dusky Flycatcher nests in 8 meadows. Average clutch size was 3.9 eggs. Egg laying, incubation, and nestling stages were 4, 15.4, and 16.4 days, respectively. Eighteen nests successfully fledged young, with an average of 3.3 fledglings per successful nest. Nest success was 43% and nest predation was the leading cause of nest failure. Estimated annual fecundity was 1.62 fledglings per pair; however, because all renesting attempts were not located, this should be viewed as the minimum annual fecundity. Dusky Flycatchers we monitored may have had higher fecundity than those nesting in upland areas because riparian areas often have higher arthropod abundances. While the importance of riparian conservation to riparian-obligate bird species is obvious, our study indicates that these areas also may be of value to Dusky Flycatchers that breed in riparian areas and upland areas.     

One phenomenon, many models: Inconsistency and complementarity

The paper examines philosophical issues that arise in contexts where one has many different models for treating the same system. I show why in some cases this appears relatively unproblematic (models of turbulence) while others represent genuine difficulties when attempting to interpret the information that models provide (nuclear models). What the examples show is that while complementary models needn’t be a hindrance to knowledge acquisition, the kind of inconsistency present in nuclear cases is, since it is indicative of a lack of genuine theoretical understanding. It is important to note that the differences in modeling do not result directly from the status of our knowledge of turbulent flows as opposed to nuclear dynamics—both face fundamental theoretical problems in the construction and application of models. However, as we shall, the ‘problem context(s)’ in which the modeling takes plays a decisive role in evaluating the epistemic merit of the models themselves. Moreover, the theoretical difficulties that give rise to inconsistent as opposed to complementary models (in the cases I discuss) impose epistemic and methodological burdens that cannot be overcome by invoking philosophical strategies like perspectivism, paraconsistency or partial structures.     

NLRX1 is a regulator of mitochondrial antiviral immunity

The RIG-like helicase (RLH) family of intracellular receptors detect viral nucleic acid and signal through the mitochondrial antiviral signalling adaptor MAVS (also known as Cardif, VISA and IPS-1) during a viral infection. MAVS activation leads to the rapid production of antiviral cytokines, including type 1 interferons. Although MAVS is vital to antiviral immunity, its regulation from within the mitochondria remains unknown. Here we describe human NLRX1, a highly conserved nucleotide-binding domain (NBD)- and leucine-rich-repeat (LRR)-containing family member (known as NLR) that localizes to the mitochondrial outer membrane and interacts with MAVS. Expression of NLRX1 results in the potent inhibition of RLH- and MAVS-mediated interferon-beta promoter activity and in the disruption of virus-induced RLH-MAVS interactions. Depletion of NLRX1 with small interference RNA promotes virus-induced type I interferon production and decreases viral replication. This work identifies NLRX1 as a check against mitochondrial antiviral responses and represents an intersection of three ancient cellular processes: NLR signalling, intracellular virus detection and the use of mitochondria as a platform for anti-pathogen signalling. This represents a conceptual advance, in that NLRX1 is a modulator of pathogen-associated molecular pattern receptors rather than a receptor, and identifies a key therapeutic target for enhancing antiviral responses.     

A centrosomal mechanism involving CDK5RAP2 and CENPJ controls brain size

Autosomal recessive primary microcephaly is a potential model in which to research genes involved in human brain growth. We show that two forms of the disorder result from homozygous mutations in the genes CDK5RAP2 and CENPJ. We found neuroepithelial expression of the genes during prenatal neurogenesis and protein localization to the spindle poles of mitotic cells, suggesting that a centrosomal mechanism controls neuron number in the developing mammalian brain.