Effect of tropical monsoon on fishery abundance of Indian squid (Uroteuthis (Photololigo) duvaucelii)

Indian squid, Uroteuthis (Photololigo) duvaucelii (Loliginidae) constitute an important component of the inshore cephalopod fisheries along the eastern Arabian Sea. Local environmental variation plays an important role in species–environment interactions in neritic squids, which inhabit nearshore/coastal waters. Such ‘active’ and ‘passive’ responses of squids to environmental changes is crucial in understanding their relationships and influence on the biological processes, distribution and abundance of the fast-growing short-lived coastal loliginids. The empirical relationship between squid abundance and the variability in rainfall and sea surface temperature (SST) were explored in a tropical monsoon fishery. Monthly catch rates (catch per fishing hour) of squids in commercial trawl during 1987–2009 were used as the abundance index. Linear regression models with ARIMA errors were fitted with catch per unit hour time series as dependent variable and rainfall and SST as exogenous variables. While rainfall was observed to have a negative effect on squid abundance, the SST recorded a positive impact. ARIMA models provided satisfactory fit to observed data and forecast of 22 months. Given that the squid life-cycle is a function of their environment, this result is relevant in forecasting squid biomass for the management of tropical monsoon fisheries.     

Relating abundance of purpleback flying squid Sthenoteuthis oualaniensis (Cephalopoda: Ommastrephidae) to environmental parameters using GIS and GAM in south-eastern Arabian Sea

The distribution pattern of purpleback flying squid and the relationship between its abundance and environmental variables in the south-eastern Arabian Sea were analysed using a geographical information system (GIS) and a generalised additive model (GAM). Highest abundances were observed during December and January within 10 and 13°N and 71 and 72°E around the Lakshadweep Islands. The mean abundance in the area was 4.21 tonnes/km² and the maximum sustainable yield (MSY) was estimated as 0.63 million tonnes. GAM indicated that very high squid abundance was associated with low values of dissolved oxygen (6.01–6.27 mg/L), sea surface temperature (28.03–28.62°C), pH (7.75–8.56), salinity (30.42–34.48 psu), chlorophyll-a (0.4–0.6 mg/m³), zooplankton biomass (0.23–0.64 mL/m³), and shallow 20°C isotherm (101.2–134.7 m) and mixed layer depth (17.8–29.8 m). As a carnivore from paralarval stages, S. oualaniensis depends on secondary and tertiary production to sustain its population for which primary production is used up. In the tropical Arabian Sea where temperature differences are not so pronounced, S. oualaniensis distribution was found to be related to a low but very narrow sea surface temperature (SST) band. There is sufficient fishable biomass in the area to possibly launch a new targeted oceanic squid fishery from the western seaboard of India.     

Intracellular cytoskeletal elements and cytoskeletons in bacteria

Within a short period of time after the discovery of bacterial cytoskletons, major progress had been made in areas such as general spatial layout of cytoskeletons, their involvement in a variety of cellfunctions (shape control, cell division, chromosome segregation, cell motility). This progress was achieved by application of advanced investigation techniques. Homologs of eukaryotic actin, tubulin, and intermediate filaments were found in bacteria; cytoskeletal proteins not closely or not at all related to any of these major cytoskeletal proteins were discovered in a number of bacteria such as Mycoplasmas, Spiroplasmas, Spirochetes, Treponema, Caulobacter. A structural role for bacterial elongation factor Tu was indicated. On the basis of this new thinking, new approaches in biotechnology and new drugs are on the way.     

Low gene copy number shows that arbuscular mycorrhizal fungi inherit genetically different nuclei

Arbuscular mycorrhizal fungi (AMF) are ancient asexually reproducing organisms that form symbioses with the majority of plant species, improving plant nutrition and promoting plant diversity. Little is known about the evolution or organization of the genomes of any eukaryotic symbiont or ancient asexual organism. Direct evidence shows that one AMF species is heterokaryotic; that is, containing populations of genetically different nuclei. It has been suggested, however, that the genetic variation passed from generation to generation in AMF is simply due to multiple chromosome sets (that is, high ploidy). Here we show that previously documented genetic variation in Pol-like sequences, which are passed from generation to generation, cannot be due to either high ploidy or repeated gene duplications. Our results provide the clearest evidence so far for substantial genetic differences among nuclei in AMF. We also show that even AMF with a very large nuclear DNA content are haploid. An underlying principle of evolutionary theory is that an individual passes on one or half of its genome to each of its progeny. The coexistence of a population of many genomes in AMF and their transfer to subsequent generations, therefore, has far-reaching consequences for understanding genome evolution.     

Effectiveness of the global protected area network in representing species diversity

The Fifth World Parks Congress in Durban, South Africa, announced in September 2003 that the global network of protected areas now covers 11.5% of the planet's land surface. This surpasses the 10% target proposed a decade earlier, at the Caracas Congress, for 9 out of 14 major terrestrial biomes. Such uniform targets based on percentage of area have become deeply embedded into national and international conservation planning. Although politically expedient, the scientific basis and conservation value of these targets have been questioned. In practice, however, little is known of how to set appropriate targets, or of the extent to which the current global protected area network fulfils its goal of protecting biodiversity. Here, we combine five global data sets on the distribution of species and protected areas to provide the first global gap analysis assessing the effectiveness of protected areas in representing species diversity. We show that the global network is far from complete, and demonstrate the inadequacy of uniform--that is, 'one size fits all'--conservation targets.     

Shiga toxin induces tubular membrane invaginations for its uptake into cells

Clathrin seems to be dispensable for some endocytic processes and, in several instances, no cytosolic coat protein complexes could be detected at sites of membrane invagination. Hence, new principles must in these cases be invoked to account for the mechanical force driving membrane shape changes. Here we show that the Gb3 (glycolipid)-binding B-subunit of bacterial Shiga toxin induces narrow tubular membrane invaginations in human and mouse cells and model membranes. In cells, tubule occurrence increases on energy depletion and inhibition of dynamin or actin functions. Our data thus demonstrate that active cellular processes are needed for tubule scission rather than tubule formation. We conclude that the B-subunit induces lipid reorganization that favours negative membrane curvature, which drives the formation of inward membrane tubules. Our findings support a model in which the lateral growth of B-subunit-Gb3 microdomains is limited by the invagination process, which itself is regulated by membrane tension. The physical principles underlying this basic cargo-induced membrane uptake may also be relevant to other internalization processes, creating a rationale for conceptualizing the perplexing diversity of endocytic routes.     

Functional profiling of the Saccharomyces cerevisiae genome

Determining the effect of gene deletion is a fundamental approach to understanding gene function. Conventional genetic screens exhibit biases, and genes contributing to a phenotype are often missed. We systematically constructed a nearly complete collection of gene-deletion mutants (96% of annotated open reading frames, or ORFs) of the yeast Saccharomyces cerevisiae. DNA sequences dubbed 'molecular bar codes' uniquely identify each strain, enabling their growth to be analysed in parallel and the fitness contribution of each gene to be quantitatively assessed by hybridization to high-density oligonucleotide arrays. We show that previously known and new genes are necessary for optimal growth under six well-studied conditions: high salt, sorbitol, galactose, pH 8, minimal medium and nystatin treatment. Less than 7% of genes that exhibit a significant increase in messenger RNA expression are also required for optimal growth in four of the tested conditions. Our results validate the yeast gene-deletion collection as a valuable resource for functional genomics.     

Plate-boundary deformation associated with the great Sumatra-Andaman earthquake

The Sumatra-Andaman earthquake of 26 December 2004 is the first giant earthquake (moment magnitude M(w) > 9.0) to have occurred since the advent of modern space-based geodesy and broadband seismology. It therefore provides an unprecedented opportunity to investigate the characteristics of one of these enormous and rare events. Here we report estimates of the ground displacement associated with this event, using near-field Global Positioning System (GPS) surveys in northwestern Sumatra combined with in situ and remote observations of the vertical motion of coral reefs. These data show that the earthquake was generated by rupture of the Sunda subduction megathrust over a distance of >1,500 kilometres and a width of <150 kilometres. Megathrust slip exceeded 20 metres offshore northern Sumatra, mostly at depths shallower than 30 kilometres. Comparison of the geodetically and seismically inferred slip distribution indicates that approximately 30 per cent additional fault slip accrued in the 1.5 months following the 500-second-long seismic rupture. Both seismic and aseismic slip before our re-occupation of GPS sites occurred on the shallow portion of the megathrust, where the large Aceh tsunami originated. Slip tapers off abruptly along strike beneath Simeulue Island at the southeastern edge of the rupture, where the earthquake nucleated and where an M(w) = 7.2 earthquake occurred in late 2002. This edge also abuts the northern limit of slip in the 28 March 2005 M(w) = 8.7 Nias-Simeulue earthquake.     

Fuzzy preferences in conflicts

A systematic fuzzy approach is developed to model fuzziness and uncertainties in the preferences of decision makers involved in a conflict. This unique fuzzy preference formulation is used within the paradigm of the Graph Model for Conflict Resolution in which a given dispute is modeled in terms of decision makers, each decision maker＇s courses of actions or options, and each decision maker＇s preferences concerning the states or outcomes which could take place. In order to be able to determine the stability of each state for each decision maker and the possible equilibria or resolutions, a range of solution concepts describing potential human behavior under conflict are defined for use with fuzzy preferences. More specifically, strong and weak definitions of stability are provided for the solution concepts called Nash, general metarational, symmetric metarational, and sequential stability. To illustrate how these solution concepts can be conveniently used in practice, they are applied to a dispute over the contamination of an aquifer by a chemical company located in Elmira, Ontario, Canada.