Inconsistencies in Constituent Theories of World Views: Quantum Mechanical Examples

We put forward the hypothesis that there exist three basic attitudes towards inconsistencies within world views: (1) The inconsistency is tolerated temporarily and is viewed as an expression of a temporary lack of knowledge due to an incomplete or wrong theory. The resolution of the inconsistency is believed to be inherent to the improvement of the theory. This improvement ultimately resolves the contradiction and therefore we call this attitude the ‘regularising’ attitude; (2) The inconsistency is tolerated and both contradicting elements in the theory are retained. This attitude integrates the inconsistency and leads to a paraconsistent calculus; therefore we will call it the paraconsistent attitude. (3) In the third attitude, both elements of inconsistency are considered to be false and the ‘real situation’ is considered something different that can not be described by the theory constructively. This indicates the incompleteness of the theory, and leads us to a paracomplete calculus; therefore we call it the paracomplete attitude. We illustrate these three attitudes by means of two ‘paradoxical’ situations in quantum mechanics, the wave-particle duality and the situation of non locality. This revised version was published online in July 2006 with corrections to the Cover Date.     

Properties of leukocyte catalase from normal and acatalasemic humans

Zusammenfassung Beim Akatalasie-Fall A.B. ist die in den Leukozyten vorhandene Katalase-Restaktivität wesentlich höher (13%) als diejenige in den Erythrozyten (etwa 1% der Norm), wie dies beim Vorliegen einer instabilen Enzymvariante zu erwarten ist. Die Enzyme beider Zelltypen sind antigen-identisch und zeigen denselben Grad von Thermolabilität.     

Subtypes of medulloblastoma have distinct developmental origins

Medulloblastoma encompasses a collection of clinically and molecularly diverse tumour subtypes that together comprise the most common malignant childhood brain tumour. These tumours are thought to arise within the cerebellum, with approximately 25% originating from granule neuron precursor cells (GNPCs) after aberrant activation of the Sonic Hedgehog pathway (hereafter, SHH subtype). The pathological processes that drive heterogeneity among the other medulloblastoma subtypes are not known, hindering the development of much needed new therapies. Here we provide evidence that a discrete subtype of medulloblastoma that contains activating mutations in the WNT pathway effector CTNNB1 (hereafter, WNT subtype) arises outside the cerebellum from cells of the dorsal brainstem. We found that genes marking human WNT-subtype medulloblastomas are more frequently expressed in the lower rhombic lip (LRL) and embryonic dorsal brainstem than in the upper rhombic lip (URL) and developing cerebellum. Magnetic resonance imaging (MRI) and intra-operative reports showed that human WNT-subtype tumours infiltrate the dorsal brainstem, whereas SHH-subtype tumours are located within the cerebellar hemispheres. Activating mutations in Ctnnb1 had little impact on progenitor cell populations in the cerebellum, but caused the abnormal accumulation of cells on the embryonic dorsal brainstem which included aberrantly proliferating Zic1(+) precursor cells. These lesions persisted in all mutant adult mice; moreover, in 15% of cases in which Tp53 was concurrently deleted, they progressed to form medulloblastomas that recapitulated the anatomy and gene expression profiles of human WNT-subtype medulloblastoma. We provide the first evidence, to our knowledge, that subtypes of medulloblastoma have distinct cellular origins. Our data provide an explanation for the marked molecular and clinical differences between SHH- and WNT-subtype medulloblastomas and have profound implications for future research and treatment of this important childhood cancer.     

Genotype, haplotype and copy-number variation in worldwide human populations

Genome-wide patterns of variation across individuals provide a powerful source of data for uncovering the history of migration, range expansion, and adaptation of the human species. However, high-resolution surveys of variation in genotype, haplotype and copy number have generally focused on a small number of population groups. Here we report the analysis of high-quality genotypes at 525,910 single-nucleotide polymorphisms (SNPs) and 396 copy-number-variable loci in a worldwide sample of 29 populations. Analysis of SNP genotypes yields strongly supported fine-scale inferences about population structure. Increasing linkage disequilibrium is observed with increasing geographic distance from Africa, as expected under a serial founder effect for the out-of-Africa spread of human populations. New approaches for haplotype analysis produce inferences about population structure that complement results based on unphased SNPs. Despite a difference from SNPs in the frequency spectrum of the copy-number variants (CNVs) detected--including a comparatively large number of CNVs in previously unexamined populations from Oceania and the Americas--the global distribution of CNVs largely accords with population structure analyses for SNP data sets of similar size. Our results produce new inferences about inter-population variation, support the utility of CNVs in human population-genetic research, and serve as a genomic resource for human-genetic studies in diverse worldwide populations.     

异常黑胆质成熟剂中各单味药对HL-60细胞增殖的抑制作用

异常黑胆质成熟剂是维吾尔医复方制剂,由甘草、红枣、破布木、牛舌草、铁线蕨、地锦草、小茴香、薰衣草、蜜蜂花和刺糖10味药组成,用于治疗由异常黑胆质所导致的肿瘤、糖尿病和心血管疾病等。研究了异常黑胆质成熟剂中各单味药(除刺糖外)对HL-60细胞增殖的抑制作用。HL-60细胞暴露于各单味药两种不同提取物(二氯甲烷和甲醇),于37℃、CO2体积分数为5%的恒温孵箱中培养后24、48、72h,用台盼蓝染色法检测细胞存活率。结果表明,各单味药的二氯甲烷提取物除小茴香外均显著降低HL-60癌细胞的存活率(P<0.05)。在甲醇提取物中,只有甘草和地锦草两味药的甲醇提取物可显著降低HL-60癌细胞的存活率(P<0.05)。与各单味药甲醇提取物相比,其二氯甲烷提取物均显著降低HL-60癌细胞的存活率(P<0.05)。结果显示,破布木、地锦草、铁线蕨、甘草、红枣、薰衣草、牛舌草和蜜蜂花8味药的二氯甲烷提取物和甘草、地锦草两味药的甲醇提取物均能抑制HL-60癌细胞的体外增殖。各单味药二氯甲烷提取物对HL-60细胞增殖的抑制作用均明显强于其相应的甲醇提取物。     

The Liar-paradox in a Quantum Mechanical Perspective

In this paper we concentrate on the nature of the liar paradox asa cognitive entity; a consistently testable configuration of properties. We elaborate further on a quantum mechanical model (Aerts, Broekaert and Smets, 1999) that has been proposed to analyze the dynamics involved, and we focus on the interpretation and concomitant philosophical picture. Some conclusions we draw from our model favor an effective realistic interpretation of cognitive reality.     

Proteome survey reveals modularity of the yeast cell machinery

Protein complexes are key molecular entities that integrate multiple gene products to perform cellular functions. Here we report the first genome-wide screen for complexes in an organism, budding yeast, using affinity purification and mass spectrometry. Through systematic tagging of open reading frames (ORFs), the majority of complexes were purified several times, suggesting screen saturation. The richness of the data set enabled a de novo characterization of the composition and organization of the cellular machinery. The ensemble of cellular proteins partitions into 491 complexes, of which 257 are novel, that differentially combine with additional attachment proteins or protein modules to enable a diversification of potential functions. Support for this modular organization of the proteome comes from integration with available data on expression, localization, function, evolutionary conservation, protein structure and binary interactions. This study provides the largest collection of physically determined eukaryotic cellular machines so far and a platform for biological data integration and modelling.     

Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index

Obesity is globally prevalent and highly heritable, but its underlying genetic factors remain largely elusive. To identify genetic loci for obesity susceptibility, we examined associations between body mass index and ～ 2.8 million SNPs in up to 123,865 individuals with targeted follow up of 42 SNPs in up to 125,931 additional individuals. We confirmed 14 known obesity susceptibility loci and identified 18 new loci associated with body mass index (P < 5 × 10??), one of which includes a copy number variant near GPRC5B. Some loci (at MC4R, POMC, SH2B1 and BDNF) map near key hypothalamic regulators of energy balance, and one of these loci is near GIPR, an incretin receptor. Furthermore, genes in other newly associated loci may provide new insights into human body weight regulation.     

Mutations in axonemal dynein assembly factor DNAAF3 cause primary ciliary dyskinesia

Primary ciliary dyskinesia most often arises from loss of the dynein motors that power ciliary beating. Here we show that DNAAF3 (also known as PF22), a previously uncharacterized protein, is essential for the preassembly of dyneins into complexes before their transport into cilia. We identified loss-of-function mutations in the human DNAAF3 gene in individuals from families with situs inversus and defects in the assembly of inner and outer dynein arms. Knockdown of dnaaf3 in zebrafish likewise disrupts dynein arm assembly and ciliary motility, causing primary ciliary dyskinesia phenotypes that include hydrocephalus and laterality malformations. Chlamydomonas reinhardtii PF22 is exclusively cytoplasmic, and a PF22-null mutant cannot assemble any outer and some inner dynein arms. Altered abundance of dynein subunits in mutant cytoplasm suggests that DNAAF3 (PF22) acts at a similar stage as other preassembly proteins, for example, DNAAF2 (also known as PF13 or KTU) and DNAAF1 (also known as ODA7 or LRRC50), in the dynein preassembly pathway. These results support the existence of a conserved, multistep pathway for the cytoplasmic formation of assembly competent ciliary dynein complexes.