Microhabitat-specific controls on soil respiration and denitrification in the Mojave Desert: the role of harvester ant nests and vegetation

Seed harvesting ants ( Pogonomyrmex rugosus ) concentrate organic matter and nutrients near their nests and create biogeochemical hotspots in desert soil. We examined factors regulating denitrification and soil respiration in a Mojave Desert ecosystem to determine the role harvester ant colonies play in nitrogen loss and carbon mineralization. Organic matter and nutrient storage were significantly greater in colonies than under the dominant vegetation (i.e., Pleuraphis rigida , a bunch grass) and in bare soil, with standing stocks of inorganic nitrogen in colonies nearly 4-fold greater than in the other microhabitats. Soil respiration, measured with laboratory incubations, was below detection limits under ambient soil conditions. Respiration rate in soil from bare patches and under grass was limited by water and labile organic carbon, with secondary nitrate limitation evident only once carbon limitation was alleviated. Soil respiration in ant nest soil was limited by water and labile organic carbon only. Denitrification, measured by the acetylene block technique, was elevated in bare soil and under grass with the addition of nitrate. Ant nest soil also responded to a nitrate addition; however, denitrification rate was greatest with addition of glucose. Ordinarily desert soil has low rates of respiration and denitrification due to dry ambient conditions. However, ant colonies likely function as important sites for nitrogen loss and carbon mineralization following rain storms, especially if storms coincide with seed set and the temporally pulsed input of organic matter into colonies.     

Quantum interference between two single photons emitted by independently trapped atoms

When two indistinguishable single photons are fed into the two input ports of a beam splitter, the photons will coalesce and leave together from the same output port. This is a quantum interference effect, which occurs because two possible paths-in which the photons leave by different output ports-interfere destructively. This effect was first observed in parametric downconversion (in which a nonlinear crystal splits a single photon into two photons of lower energy), then from two separate downconversion crystals, as well as with single photons produced one after the other by the same quantum emitter. With the recent developments in quantum information research, much attention has been devoted to this interference effect as a resource for quantum data processing using linear optics techniques. To ensure the scalability of schemes based on these ideas, it is crucial that indistinguishable photons are emitted by a collection of synchronized, but otherwise independent sources. Here we demonstrate the quantum interference of two single photons emitted by two independently trapped single atoms, bridging the gap towards the simultaneous emission of many indistinguishable single photons by different emitters. Our data analysis shows that the observed coalescence is mainly limited by wavefront matching of the light emitted by the two atoms, and to a lesser extent by the motion of each atom in its own trap.     

The DNA sequence and biological annotation of human chromosome 1

The reference sequence for each human chromosome provides the framework for understanding genome function, variation and evolution. Here we report the finished sequence and biological annotation of human chromosome 1. Chromosome 1 is gene-dense, with 3,141 genes and 991 pseudogenes, and many coding sequences overlap. Rearrangements and mutations of chromosome 1 are prevalent in cancer and many other diseases. Patterns of sequence variation reveal signals of recent selection in specific genes that may contribute to human fitness, and also in regions where no function is evident. Fine-scale recombination occurs in hotspots of varying intensity along the sequence, and is enriched near genes. These and other studies of human biology and disease encoded within chromosome 1 are made possible with the highly accurate annotated sequence, as part of the completed set of chromosome sequences that comprise the reference human genome.     

The plant immune system

Many plant-associated microbes are pathogens that impair plant growth and reproduction. Plants respond to infection using a two-branched innate immune system. The first branch recognizes and responds to molecules common to many classes of microbes, including non-pathogens. The second responds to pathogen virulence factors, either directly or through their effects on host targets. These plant immune systems, and the pathogen molecules to which they respond, provide extraordinary insights into molecular recognition, cell biology and evolution across biological kingdoms. A detailed understanding of plant immune function will underpin crop improvement for food, fibre and biofuels production.