Genome-wide association study identifies a second prostate cancer susceptibility variant at 8q24

Prostate cancer is the most prevalent noncutaneous cancer in males in developed regions, with African American men having among the highest worldwide incidence and mortality rates. Here we report a second genetic variant in the 8q24 region that, in conjunction with another variant we recently discovered, accounts for about 11%-13% of prostate cancer cases in individuals of European descent and 31% of cases in African Americans. We made the current discovery through a genome-wide association scan of 1,453 affected Icelandic individuals and 3,064 controls using the Illumina HumanHap300 BeadChip followed by four replication studies. A key step in the discovery was the construction of a 14-SNP haplotype that efficiently tags a relatively uncommon (2%-4%) susceptibility variant in individuals of European descent that happens to be very common (approximately 42%) in African Americans. The newly identified variant shows a stronger association with affected individuals who have an earlier age at diagnosis.     

Genetic clonal diversity predicts progression to esophageal adenocarcinoma

Neoplasms are thought to progress to cancer through genetic instability generating cellular diversity and clonal expansions driven by selection for mutations in cancer genes. Despite advances in the study of molecular biology of cancer genes, relatively little is known about evolutionary mechanisms that drive neoplastic progression. It is unknown, for example, which may be more predictive of future progression of a neoplasm: genetic homogenization of the neoplasm, possibly caused by a clonal expansion, or the accumulation of clonal diversity. Here, in a prospective study, we show that clonal diversity measures adapted from ecology and evolution can predict progression to adenocarcinoma in the premalignant condition known as Barrett's esophagus, even when controlling for established genetic risk factors, including lesions in TP53 (p53; ref. 6) and ploidy abnormalities. Progression to cancer through accumulation of clonal diversity, on which natural selection acts, may be a fundamental principle of neoplasia with important clinical implications.     

Ecological review of black-tailed prairie dogs and associated species in western South Dakota

Black-tailed prairie dogs ( Cynomys ludovicianus ) once occupied extensive areas throughout the Great Plains. In recent years massive control programs have been initiated to reduce prairie dog populations, primarily to benefit the livestock grazing industry. Currently in western South Dakota most prairie dogs are found on public lands. Control programs using toxicants for prairie dogs have been found to be economically unfeasible when not combined with reductions in livestock grazing. Control programs also have negatively impacted some nontarget species of birds and small mammals. Livestock grazing is directly related to prairie dog densities. Prairie dog and livestock grazing activities are responsible for keeping plant phenological development in a suppressed vegetative stage with higher nutritional qualities that attract greater herbivore use. Prairie dog colonies create and enhance habitat for many wildlife species; in western South Dakota 134 vertebrate wildlife species have been documented on prairie dog towns. Scientific evidence strongly suggests that prairie dogs are valuable components of the prairie ecosystem. They are responsible for maintaining, creating, and regulating habitat biodiversity through soil and vegetative manipulation for a host of vertebrate and invertebrate species dependent upon prairie dog activity for their survival.     

Vulnerability of Fremont cottonwood ( Populus fremontii Wats.) individuals to xylem cavitation

Embolism, the blockage of water transport in the xylem by air, is an important consequence of low water availability for all plant species. Riparian plants, since they typically experience mesic conditions, are not water stress tolerant and hence are vulnerable to xylem cavitation, the formation of emboli. We have constructed a composite vulnerability curve for Populus fremontii (Fremont cottonwood); assessed native state embolism, critical xylem pressure potential (Ψ cav ), and safety margin; and determined predawn and midday leaf water potential (Ψ L ) within a central New Mexico cottonwood population. Our results indicate (1) that this population of P. fremontii is extremely vulnerable to cavitation, with complete xylem blockage occurring at -2.25 MPa, and (2) that native state embolism is between 19% and 42%. Ψ cav was determined to be -1.36 MPa. Measurements of predawn Ψ L were typically near -0.5 MPa while midday Ψ L values averaged -1.7 MPa. Estimates of midday xylem pressure potential (Ψ px ) were -1.1 MPa. These values suggest that these individuals maintain small safety margins (0.26 MPa) between Ψ px and Ψ cav . This small safety margin may be detrimental under increased variation in water availability caused by anthropogenic alteration of river systems.     

An abundance of small exoplanets around stars with a wide range of metallicities

The abundance of heavy elements (metallicity) in the photospheres of stars similar to the Sun provides a 'fossil' record of the chemical composition of the initial protoplanetary disk. Metal-rich stars are much more likely to harbour gas giant planets, supporting the model that planets form by accumulation of dust and ice particles. Recent ground-based surveys suggest that this correlation is weakened for Neptunian-sized planets. However, how the relationship between size and metallicity extends into the regime of terrestrial-sized exoplanets is unknown. Here we report spectroscopic metallicities of the host stars of 226 small exoplanet candidates discovered by NASA's Kepler mission, including objects that are comparable in size to the terrestrial planets in the Solar System. We find that planets with radii less than four Earth radii form around host stars with a wide range of metallicities (but on average a metallicity close to that of the Sun), whereas large planets preferentially form around stars with higher metallicities. This observation suggests that terrestrial planets may be widespread in the disk of the Galaxy, with no special requirement of enhanced metallicity for their formation.     

A reconnaissance of the Cu isotopic compositions of hydrothermal vein-type cop-per deposit, Jinman, Yunnan,China

The Jinman deposit is a low-temperature hydrothermal vein-type copper deposit, which occurs along faults and fractures within Middle Jurassic sandstone and mudstone units of the Lanping-Simao Mesozoic-Cenozoic basin of Yunnan Province. In this note, we report for the first time the Cu isotopic compositions of Cu-sulfides from the Jinman deposit. The data show large variations and low 65Cu values of 3.70‰ to +0.30‰, which are in sharp contrast to the 65Cu values of high-temperature magmatic-hydrothermal copper deposits (0.62‰ to +0.40‰) and the modern ocean-floor massive sulfide deposits (0.48‰ to +1.15‰). It is suggested that the Cu isotope fractionation at Jinman is affected mainly by the following factors, i.e. a low temperature of ore formation (150-286℃); a sedimentary source for ore materials; various stages of ore deposition; and involvement of organic matter in the ore-forming processes.     

Detecting deterministic dynamics of cardiac rhythm

Under the acceptable hypothesis that cardiac rhythm is an approximately deterministic process with a small scale noise component, an available way is provided to construct a model that can reflect its prominent dynamics of the deterministic component. When applied to the analysis of 19 heart rate data sets, three main findings are stated. The obtained model can reflect prominent dynamics of the deterministic component of cardiac rhythm; Cardiac chaos is stated in a reliable way; Dynamical noise plays an important role to the generation of complex cardiac rhythm.