Non-fermentative pathways for synthesis of branched-chain higher alcohols as biofuels

Global energy and environmental problems have stimulated increased efforts towards synthesizing biofuels from renewable resources. Compared to the traditional biofuel, ethanol, higher alcohols offer advantages as gasoline substitutes because of their higher energy density and lower hygroscopicity. In addition, branched-chain alcohols have higher octane numbers compared with their straight-chain counterparts. However, these alcohols cannot be synthesized economically using native organisms. Here we present a metabolic engineering approach using Escherichia coli to produce higher alcohols including isobutanol, 1-butanol, 2-methyl-1-butanol, 3-methyl-1-butanol and 2-phenylethanol from glucose, a renewable carbon source. This strategy uses the host's highly active amino acid biosynthetic pathway and diverts its 2-keto acid intermediates for alcohol synthesis. In particular, we have achieved high-yield, high-specificity production of isobutanol from glucose. The strategy enables the exploration of biofuels beyond those naturally accumulated to high quantities in microbial fermentation.     

List of Oregon Scolytidae (Coleoptera) and notes on new records

Listed are 121 species of Scolytidae from Oregon. Ten species are reported from Oregon for the first time: Hylastes tenuis Eichhoff, Phloeosinus scopulorum scopulorum Swaine, Phloeosinus hoferi Blackman, Trypodendron betulae Swaine, Xyleborus xylographus (Say), Trypophloeus striatulus (Mannerheim), T. Thatcheri Wood, Procryphalus mucronatus (LeConte), Pityophthorus scalptor Blackman, and Monarthrum dentigerum (LeConte). The second Oregon specimen of an exotic species, Xyleborus californicus Wood, is reported also.     

Seed dispersal, seed entrapment, and seedling recruitment in a temporally variable desert playa

Natural establishment of seedlings in desert playas with temporally variable precipitation hinges on many factors, including seed production, seed dispersal, seed entrapment, seed germination, and seedling survival. We investigated natural seed dispersal patterns and the effects of surface texture, wind barriers, resource availability (water and nutrients), and protection from herbivory on seedling establishment in a desert playa. We hypothesized that the seed rain would be consistent throughout the year and that seedling establishment would improve in resource-amended plots with barriers to wind dispersal. Contrary to our hypotheses, seed flux peaked seasonally during the winter, and fertilization had no consistent effect on seedling establishment. Seed availability for dispersal correlated with precipitation in the previous water year, whereas seedling recruitment was greatest when current-year precipitation during the spring germination and summer seedling growth periods was high. Gravel and barrier surface treatments contained more surviving seedlings than other surface treatments. Comparison with plots located outside of herbivore exclosures, however, showed that greater seedling presence in gravel plots may be due somewhat to protection from herbivory provided by the gravel, rather than simply to the greater seed-trapping quality of the gravel. With abundant seed availability, application of surface treatments, like coarse gravel, combined with increased seasonal water availability could lead to improved shrub establishment from seed in desert playas.     

Biology and conservation of the Coral Pink Sand Dunes tiger beetle, Cicindela limbata albissima Rumpp

This study investigated the distribution, abundance, and biology of Cicindela limbata albissima Rumpp, an endemic tiger beetle known only from the Coral Pink Sand Dunes (CPSD) in southwestern Utah. A recently implemented conservation agreement between BLM, USFWS, Utah State Parks, and Kane County protects most of the known habitat of this beetle from off-highway vehicle (OHV) use. A search of collection records and field surveys of 19 Great Basin sand dune sites indicated that this species occurs only at CPSD. Yearly index counts of adults (1992-1998) during peak season in May ranged from 331 in 1997 to 895 in 1993, but the actual population size is probably 2-3 times higher than the index counts. Nearly all of the population is found in the primary habitat, a 300-m-wide × 2.7-km-long area in the southern part of the dune field. Small numbers of adults and larvae have been found at the far north end of the dune field. Mark-recapture studies indicated that most adults moved only short distances ( Surveys of dominant plant species, arthropod (potential tiger beetle prey) abundance, and OHV activity indicated that these vary throughout the dune field and may explain, in part, the distribution of C. l. albissima . The primary habitat is a transition area between the highly dynamic south end of the dune field and the more stabilized north end. Psoralidium lanceolatum Rybd., Sophora stenophylla Gray, and Stipa hymenoides R.&S. are the dominant plants in the interdunal swales of the primary habitat, but other species are dominant in other parts of the dune field. Numbers of arthropod individuals and taxa are greatest in the primary habitat. Off-highway vehicle activity was greatest at the south end of the dune field and lowest at the far north end. Run-over trials and observational data revealed that adult beetles are killed by OHVs, but more important impacts may be damage to vegetation, reduction of arthropod prey of C. l. albissima , and disturbance and increased desiccation of the larval microhabitat. We anticipate that the conservation agreement will provide long-term protection for this species at CPSD.     

Influence of soil water availability on competition among leafy spurge ( Euphorbia Esula ) and grasses

Some perturbations differentially influence invasive plant and grass production. For example, growth regulator herbicides and biological control agents can dramatically reduce leafy spurge production while having little or no influence on grass production, and overgrazing can reduce grass production while not substantially influencing leafy spurge production because cattle typically ingest little or no leafy spurge. To predict how grass production will respond to a perturbation that influences only leafy spurge and to predict how leafy spurge production will respond to a perturbation that affects only grasses, competitive relationships must be understood. Seeding mixtures of leafy spurge and 2 grasses were planted in experiments and grown for 127 days to determine whether different water application regimes influenced competition among these 3 species. Competition became less intense as the number of water applications increased. If this finding holds true under field conditions, then it indicates that competition is less intense in years and locations with numerous precipitation events. Competitive interactions (i.e., competition coefficients) were less variable when water was applied more frequently, but the ability of models to account for variation in plant weight (i.e., r 2 ) was not influenced by the frequency of water application. This suggests that models will predict invasive plant and grass biomass with equal accuracy in years with few or many precipitation events. Competitive effects were similar regardless of grass species, which suggests that grasses might be considered collectively in predicting response to perturbations in the field.     

Life cycle and incidence of Diplostomum spathaceum Rudolphi (1819) (Trematoda: Diplostomatidae) in Utah

Diplostomum spathaceum (Trematoda: Diplostomatidae) causes a disease known as diplostomatosis (eye fluke disease) and has been found to be widespread throughout the fish of Utah. Totals of 756 snails (5 species), 893 fish (21 species) and 6 species of birds were examined for the presence of larval and adult D. spathaceum from 17 collecting sites throughout Utah. Pathologic effects such as blindness, subacute inflammatory reactions, cornea perforation, and ruptured globe due to diplostomatosis upon the fish host are listed. Fish host and parasite infection data of D. spathaceum for the major lakes of Utah are given.     

Genetic differentiation of rare and common varieties of Eriogonum shockleyi (Polygonaceae) in Idaho using ISSR variability

Idaho populations of Eriogonum shockleyi are divided taxonomically into 2 varieties: E. shockleyi var. packardae , which is endemic to Idaho, and the typical variety, which is widespread in the western United States. Recent morphological investigations of E. shockleyi in Idaho have identified potentially reliable morphological characters for field identification of the subspecific taxa. This paper investigates the genetic basis for the separation of the 2 varieties of E. shockleyi using inter simple-sequence repeats (ISSR) markers. Although we found some morphological differences between the populations that correlated with the 2 varieties, we identified no molecular markers in this study to distinguish between them. Morphological measurements obtained in the field indicate that although a population may have an overall average morphology that defines the variety, some individuals in nearly all populations have putative diagnostic characters that define the other variety. The morphological characters used to distinguish the 2 varieties are most likely the result of environmental variability and could result from differences in precipitation and soil water retention. Alternatively, high levels of outcrossing through pollen flow could be obscuring selection for morphological characters at particular sites.     

Great Basin summer range forage quality: do plants nutrients meet elk requirements?

Understanding the relative ability of forages to meet the needs of prime-age females, the productive component of elk ( Cervus elaphus ) populations, is necessary to decipher reasons for declines and potential for population growth. Information on forage nutrient dynamics for elk on Great Basin summer-fall ranges is lacking. Our primary objectives were to estimate nutrient levels in common elk forage species in northeastern Nevada at 3 time periods and evaluate whether nutrient levels met good requirements for lactating cow elk at time periods across summers. We compared crude protein, digestible energy, and macromineral levels in 2 forbs, 6 grasses, and 4 woody browse forage species to requirements for lactating cow elk in early summer, midsummer, and early fall 1999 and 2000. Spurred lupine ( Lupinus caudatus ) and snowbrush ceanothus ( Ceanothus velutinus ) were the most proteinaceous plants, exceeding requirements across all seasons. By midsummer, protein levels in all grasses were below elk requirements (12%). Digestible energy was the most limiting nutrient with woody browse meeting lactating cow elk requirements only in early fall (2750 kcal · kg -1 ). Sodium levels never exceeded about 10% of the required 600 μg · g -1 . The potential for maintaining a relatively high density of elk at forage-quality levels that fulfill requirements declines as summers progress on Great Basin summer ranges. Maintaining highly productive elk herds in the Great Basin requires that managers maintain plant communities with a diversity of forbs, grasses, and browse to provide for nutritional needs of lactating cows and their growing calves.     

Structure of alpine plant communities near King's Peak, Uinta Mountains, Utah

A study was made at 18 sites with elevations between 3512 and 3768 m in the Uinta Mountains, Utah. Sites were small in extent but typified vegetation patterns found in the Uintas. Standing crop, species composition (based on dry weight), and values for several physical parameters were determined at each site. Simple linear regressions performed between the various biotic and abiotic characters revealed significant relationships between the characteristics of rocks visible at the surface (the number, size, and variation in size) and vegetation cover. This relationship was probably due to the burial of rocks as a region became vegetated. Bray and Curtis ordinations performed on the data indicated that there were several factors which influenced the species composition but that no single factor dictated the vegetational pattern.     

Population structure and ecological effects of the crayfish Pacifastacus leniusculus in Castle Lake, California

The recent appearance of the ""California crayfish,"" Pacifastacus leniusculus , in Castle Lake, California, and interest in its potential impacts on the lake ecosystem provided motivation for a study of the population structure and habitat use of this species and its effects on aquatic macrophytes. Mark-recapture studies indicated that the total number of adult (3 + yr or older) crayfish in the lake was ca 10,100 individuals, yielding an estimate of lakewide crayfish density in preferred crayfish habitats of 0.13 adults m -2 . Using mean body mass of individuals, we estimated that ambient biomass density was 5.9 g m -2 . Length-weight relationships determined for captured individuals were sex dependent, with males having greater body mass for a given carapace length. Length-frequency and weight-frequency diagrams indicated that P. leniusculus reaches larger sizes in Castle Lake than do populations of P. leniusculus in ultraoligotrophic Lake Tahoe. Population-wide, males were significantly larger in both carapace length and body mass than females. We also examined sex dependence of interhabitat differences in crayfish body size by comparing animals trapped in rocky areas with those from areas with macrophytes and soft sediments. No significant differences in overall body size were found between habitats, but a significant habitat-sex interaction term occurred because the sex-dependent size differences were more pronounced in sediment than in rocky areas. Exclosure and enclosure experiments indicated that crayfish had large but differential impacts on Castle Lake macrophyte species, as the abundance of two of the dominant species ( Chara sp., Potamogeton richardsonii ) declined in the presence of crayfish and, in one case, increased in exclosures. These effects occurred via both consumptive and nonconsumptive mechanisms. These studies indicate that and expanding population of P. leniusculus in Castle Lake may be producing sizable impacts on the littoral zone habitat.