The genome sequence of Bacillus anthracis Ames and comparison to closely related bacteria

Bacillus anthracis is an endospore-forming bacterium that causes inhalational anthrax. Key virulence genes are found on plasmids (extra-chromosomal, circular, double-stranded DNA molecules) pXO1 (ref. 2) and pXO2 (ref. 3). To identify additional genes that might contribute to virulence, we analysed the complete sequence of the chromosome of B. anthracis Ames (about 5.23 megabases). We found several chromosomally encoded proteins that may contribute to pathogenicity--including haemolysins, phospholipases and iron acquisition functions--and identified numerous surface proteins that might be important targets for vaccines and drugs. Almost all these putative chromosomal virulence and surface proteins have homologues in Bacillus cereus, highlighting the similarity of B. anthracis to near-neighbours that are not associated with anthrax. By performing a comparative genome hybridization of 19 B. cereus and Bacillus thuringiensis strains against a B. anthracis DNA microarray, we confirmed the general similarity of chromosomal genes among this group of close relatives. However, we found that the gene sequences of pXO1 and pXO2 were more variable between strains, suggesting plasmid mobility in the group. The complete sequence of B. anthracis is a step towards a better understanding of anthrax pathogenesis.     

A natural allele of Nxf1 suppresses retrovirus insertional mutations

Endogenous retroviruses have shaped the evolution of mammalian genomes. Host genes that control the effects of retrovirus insertions are therefore of great interest. The modifier-of-vibrator-1 locus (Mvb1) controls levels of correctly processed mRNA from genes mutated by endogenous retrovirus insertions into introns, including the Pitpn(vb) tremor mutation and the Eya1(BOR) model of human branchiootorenal syndrome. Positional complementation cloning identifies Mvb1 as the nuclear export factor Nxf1, providing an unexpected link between the mRNA export receptor and pre-mRNA processing. Population structure of the suppressive allele in wild Mus musculus castaneus suggests selective advantage. A congenic Mvb1(CAST) allele is a useful tool for modifying gene expression from existing mutations and could be used to manipulate engineered mutations containing retroviral elements.     

The extent and patterns of usage of Agent Orange and other herbicides in Vietnam

Herbicides including Agent Orange were sprayed by United States forces for military purposes during the Vietnam War (1961-1971) at a rate more than an order of magnitude greater than for similar domestic weed control. In 1974, the US National Academy of Sciences published estimates of the extent and distribution of herbicides sprayed. Here we present revised estimates, developed using more-complete data. The spray inventory is expanded by more than seven million litres, in particular with heavily dioxin-contaminated herbicides. Estimates for the amount of dioxin sprayed are almost doubled. Hamlet census data reveal that millions of Vietnamese were likely to have been sprayed upon directly. Our identification of specific military herbicide targets has led to a more coherent understanding of spraying. Common errors in earlier interpretations of the spray data are also discussed.     

Theophrastus on Lyngurium: Medieval and Early Modern Lore from the Classical Lapidary Tradition

The ancient philosopher Theophrastus (c. 371-285 BC) described a gemstone called lyngurium, purported to be solidified lynx urine, in his work De lapidibus ('On Stones'). Knowledge of the stone passed from him to other classical authors and into the medieval lapidary tradition, but there it was almost always linked to the 'learned master Theophrastus'. Although no physical example of the stone appears to have been seen or touched in ancient, medieval, or early modern times, its physical and medicinal properties were continually reiterated and elaborated as if it did 'exist'. By the seventeenth century, it began to disappear from lapidaries, but with no attempt to explain previous authors' errors since it had never 'existed' anyway. In tracing the career of lyngurium, this study sheds some light on the transmission of knowledge from the classical world to the Renaissance and the changing criteria by which such knowledge was judged.     

Summer food habits of coyotes in central Wyoming

Summer food habits of coyotes ( Canis latrans ) were investigated on a 3100-km 2 area in central Wyoming, divided into one deer-use area and five non-deer areas. Analysis of 404 scats (fecal samples) revealed an overall average of 63 percent occurrence of native ungulates, 63 percent leporids, 46 percent rodents, 14 percent livestock, and 11 percent birds. Pronghorn ( Antilocapra Americana ) was the ungulate most frequently consumed, occurring in about 87 percent of the scats. Mule deer ( Odocoileus hemionus ) occurred in only 8 percent, and in 5 percent the native ungulate remains were not identifiable beyond order. This large percentage of big game in the diet is apparently unusual, because big game has been of minor importance in most coyote food-habit studies. The high incidence of leporids is consistent with other studies performed in arid intermountain areas. Although cricetines, especially deer mice ( Peromyscus maniculatus ), were trapped consistently in all habitats, months, and trapping areas, they were found in scats at a lower frequency than microtines and sciurids. This suggests a coyote hunting strategy that selected for the latter two groups.