Genetic variation in Mon1a affects protein trafficking and modifies macrophage iron loading in mice

We undertook a quantitative trait locus (QTL) analysis in mice to identify modifier genes that might influence the severity of human iron disorders. We identified a strong QTL on mouse chromosome 9 that differentially affected macrophage iron burden in C57BL/10J and SWR/J mice. A C57BL/10J missense allele of an evolutionarily conserved gene, Mon1a, cosegregated with the QTL in congenic mouse lines. We present evidence that Mon1a is involved in trafficking of ferroportin, the major mammalian iron exporter, to the surface of iron-recycling macrophages. Differences in amounts of surface ferroportin correlate with differences in cellular iron content. Mon1a is also important for trafficking of cell-surface and secreted molecules unrelated to iron metabolism, suggesting that it has a fundamental role in the mammalian secretory apparatus.     

Hexon-chimaeric adenovirus serotype 5 vectors circumvent pre-existing anti-vector immunity

A common viral immune evasion strategy involves mutating viral surface proteins in order to evade host neutralizing antibodies. Such immune evasion tactics have not previously been intentionally applied to the development of novel viral gene delivery vectors that overcome the critical problem of anti-vector immunity. Recombinant, replication-incompetent adenovirus serotype 5 (rAd5) vector-based vaccines for human immunodeficiency virus type 1 and other pathogens have proved highly immunogenic in preclinical studies but will probably be limited by the high prevalence of pre-existing anti-Ad5 immunity in human populations, particularly in the developing world. Here we show that rAd5 vectors can be engineered to circumvent anti-Ad5 immunity. We constructed novel chimaeric rAd5 vectors in which the seven short hypervariable regions (HVRs) on the surface of the Ad5 hexon protein were replaced with the corresponding HVRs from the rare adenovirus serotype Ad48. These HVR-chimaeric rAd5 vectors were produced at high titres and were stable through serial passages in vitro. HVR-chimaeric rAd5 vectors expressing simian immunodeficiency virus Gag proved comparably immunogenic to parental rAd5 vectors in naive mice and rhesus monkeys. In the presence of high levels of pre-existing anti-Ad5 immunity, the immunogenicity of HVR-chimaeric rAd5 vectors was not detectably suppressed, whereas the immunogenicity of parental rAd5 vectors was abrogated. These data demonstrate that functionally relevant Ad5-specific neutralizing antibodies are focused on epitopes located within the hexon HVRs. Moreover, these studies show that recombinant viral vectors can be engineered to circumvent pre-existing anti-vector immunity by removing key neutralizing epitopes on the surface of viral capsid proteins. Such chimaeric viral vectors may have important practical implications for vaccination and gene therapy.     

The banana (Musa acuminata) genome and the evolution of monocotyledonous plants

Bananas (Musa spp.), including dessert and cooking types, are giant perennial monocotyledonous herbs of the order Zingiberales, a sister group to the well-studied Poales, which include cereals. Bananas are vital for food security in many tropical and subtropical countries and the most popular fruit in industrialized countries. The Musa domestication process started some 7,000 years ago in Southeast Asia. It involved hybridizations between diverse species and subspecies, fostered by human migrations, and selection of diploid and triploid seedless, parthenocarpic hybrids thereafter widely dispersed by vegetative propagation. Half of the current production relies on somaclones derived from a single triploid genotype (Cavendish). Pests and diseases have gradually become adapted, representing an imminent danger for global banana production. Here we describe the draft sequence of the 523-megabase genome of a Musa acuminata doubled-haploid genotype, providing a crucial stepping-stone for genetic improvement of banana. We detected three rounds of whole-genome duplications in the Musa lineage, independently of those previously described in the Poales lineage and the one we detected in the Arecales lineage. This first monocotyledon high-continuity whole-genome sequence reported outside Poales represents an essential bridge for comparative genome analysis in plants. As such, it clarifies commelinid-monocotyledon phylogenetic relationships, reveals Poaceae-specific features and has led to the discovery of conserved non-coding sequences predating monocotyledon-eudicotyledon divergence.     

Biodiversity loss and its impact on humanity

The most unique feature of Earth is the existence of life, and the most extraordinary feature of life is its diversity. Approximately 9 million types of plants, animals, protists and fungi inhabit the Earth. So, too, do 7 billion people. Two decades ago, at the first Earth Summit, the vast majority of the world's nations declared that human actions were dismantling the Earth's ecosystems, eliminating genes, species and biological traits at an alarming rate. This observation led to the question of how such loss of biological diversity will alter the functioning of ecosystems and their ability to provide society with the goods and services needed to prosper.     

Physiological, Morphological, and Environmental Variation Among Geographically Isolated Cottonwood (Populus Deltoides) Populations in New Mexico

The ability of a plant population to respond and eventually adapt to environmental stress ultimately determines that population's survival. This becomes especially significant in environments where important plant resource levels have radically decreased. Southwestern riparian areas have numerous plant species that are experiencing radical changes in water availability due to construction of dams, and thus their ability to respond to such changes is critical. One such species likely to be greatly affected by these hydrological changes is Populus deltoides var. wislizenii (cottonwood) because it relies heavily on both groundwater and river surface volume as primary water sources. Both water sources have been extremely impacted by impoundments along southwestern rivers. To understand how New Mexico populations of cottonwood may respond to environmental changes, we quantified environmental differences and characterized physiological and morphological variation among 4 cottonwood populations. Significant differences among study sites in water availability were indicated by both soil and groundwater salinity. The northernmost site, at Abiquiu, had the highest salinity levels in both soil and groundwater, followed by Bernardo, while San Antonio and Corrales sites had the lowest soil salinity. As expected, variation in physiological and leaf morphological characters existed among and within the tree populations, most likely in response to environmental factors. Midday xylem pressure potentials indicated that Abiquiu individuals suffered the greatest water stress and they also had the highest transpiration levels. Because of high specific leaf weights and high photosynthetic levels, cottonwoods at Corrales may better mitigate lower water availability. Such physiological and morphological trait variability among populations is ecologically important and may be of use in present reclamation and conservation efforts in these areas.     

Selecting wilderness areas to conserve Utah's biological diversity

Congress is currently evaluating the wilderness status of Bureau of Land Management (BLM) public lands in Utah. Wilderness areas play many important roles, and one critical role is the conservation of biological diversity. We propose that objectives for conserving biodiversity on BLM lands in Utah be to (1) ensure the long-term population viability of native animal and plant species, (2) maintain the critical ecological and evolutionary processes upon which these species depend, and (3) preserve the full range of communities, successional stages, and environmental gradients. To achieve these objectives, wilderness areas should be selected so as to protect large, contiguous areas, augment existing protected areas, buffer wilderness areas with multiple-use public lands, interconnect existing protected areas with dispersal and movement corridors, conserve entire watersheds and elevational gradients, protect native communities from invasions of exotic species, protect sites of maximum species diversity, protect sites with rare endemic species, and protect habitats of threatened and endangered species. We use a few comparatively well-studied taxa as examples to highlight the importance of particular BLM lands.     

Microhabitat-specific controls on soil respiration and denitrification in the Mojave Desert: the role of harvester ant nests and vegetation

Seed harvesting ants ( Pogonomyrmex rugosus ) concentrate organic matter and nutrients near their nests and create biogeochemical hotspots in desert soil. We examined factors regulating denitrification and soil respiration in a Mojave Desert ecosystem to determine the role harvester ant colonies play in nitrogen loss and carbon mineralization. Organic matter and nutrient storage were significantly greater in colonies than under the dominant vegetation (i.e., Pleuraphis rigida , a bunch grass) and in bare soil, with standing stocks of inorganic nitrogen in colonies nearly 4-fold greater than in the other microhabitats. Soil respiration, measured with laboratory incubations, was below detection limits under ambient soil conditions. Respiration rate in soil from bare patches and under grass was limited by water and labile organic carbon, with secondary nitrate limitation evident only once carbon limitation was alleviated. Soil respiration in ant nest soil was limited by water and labile organic carbon only. Denitrification, measured by the acetylene block technique, was elevated in bare soil and under grass with the addition of nitrate. Ant nest soil also responded to a nitrate addition; however, denitrification rate was greatest with addition of glucose. Ordinarily desert soil has low rates of respiration and denitrification due to dry ambient conditions. However, ant colonies likely function as important sites for nitrogen loss and carbon mineralization following rain storms, especially if storms coincide with seed set and the temporally pulsed input of organic matter into colonies.     

Species of Eimeria from the thirteen-lined ground squirrel, Spermophilus tridecemlineatus , from Wyoming

Five species of the coccidian genus Eimeria ( E. beecheyi [prevalence = 17.9%], E. callospermophili-morainensis [28.6%], E. larimerensis [16.1%], and E. bilamellata [3.6%]) were recovered from 56, 13-lined ground squirrels ( Spermophilus tridicemlineatus ) collected from two sites in eastern Wyoming. Two squirrels from one site were also passing an unidentified polysporocystic coccidian. Infected squirrels were found to harbor from one to three species simultaneously. Previously these same eimerian species were found infecting sympatric populations of Wyoming ground squirrels. ( Spermophilus elegans ) and white-tailed prairie dogs ( Cynomys leacurus ) at one of the sites; it is suggested that the exchange of these generalist parasite species among co-occurring sciurid hosts contributes to the consistent prevalence levels reported in Wyoming ground squirrels.