Effects of elevation and genetic introgression on growth of Colorado River cutthroat trout

Inland populations of cutthroat trout have suffered dramatic declines and some subspecies are considered threatened or endangered. Understanding patterns of variation and factors that influence life history in populations is important for conservation and management. We determined effects of elevation, sex, and genetic introgression (with Yellowstone cutthroat trout, Oncorhynchus clarkii lewisi , and rainbow trout, Oncorhynchus mykiss ) on growth rates of Colorado River cutthroat trout ( Oncorhynchus clarkii pleuriticus ) in the Sheep Creek drainage in the Uinta Mountains of Utah. In this high-elevation system, native trout grew slowly and matured relatively late. Elevation, sex, and genetic introgression all had significant effects on growth rates. Growth rates were lower at higher elevations. Males were slightly larger than females, and cutthroat trout in locations that were more introgressed grew faster than those at nonintrogressed locations. Both abiotic effects and effects of introduced salmonids must be addressed in long-term management programs to ensure the sustainability of native trout populations.     

Species-specific responses of Late Quaternary megafauna to climate and humans

Despite decades of research, the roles of climate and humans in driving the dramatic extinctions of large-bodied mammals during the Late Quaternary period remain contentious. Here we use ancient DNA, species distribution models and the human fossil record to elucidate how climate and humans shaped the demographic history of woolly rhinoceros, woolly mammoth, wild horse, reindeer, bison and musk ox. We show that climate has been a major driver of population change over the past 50,000 years. However, each species responds differently to the effects of climatic shifts, habitat redistribution and human encroachment. Although climate change alone can explain the extinction of some species, such as Eurasian musk ox and woolly rhinoceros, a combination of climatic and anthropogenic effects appears to be responsible for the extinction of others, including Eurasian steppe bison and wild horse. We find no genetic signature or any distinctive range dynamics distinguishing extinct from surviving species, emphasizing the challenges associated with predicting future responses of extant mammals to climate and human-mediated habitat change.     

A microbial symbiosis factor prevents intestinal inflammatory disease

Humans are colonized by multitudes of commensal organisms representing members of five of the six kingdoms of life; however, our gastrointestinal tract provides residence to both beneficial and potentially pathogenic microorganisms. Imbalances in the composition of the bacterial microbiota, known as dysbiosis, are postulated to be a major factor in human disorders such as inflammatory bowel disease. We report here that the prominent human symbiont Bacteroides fragilis protects animals from experimental colitis induced by Helicobacter hepaticus, a commensal bacterium with pathogenic potential. This beneficial activity requires a single microbial molecule (polysaccharide A, PSA). In animals harbouring B. fragilis not expressing PSA, H. hepaticus colonization leads to disease and pro-inflammatory cytokine production in colonic tissues. Purified PSA administered to animals is required to suppress pro-inflammatory interleukin-17 production by intestinal immune cells and also inhibits in vitro reactions in cell cultures. Furthermore, PSA protects from inflammatory disease through a functional requirement for interleukin-10-producing CD4+ T cells. These results show that molecules of the bacterial microbiota can mediate the critical balance between health and disease. Harnessing the immunomodulatory capacity of symbiosis factors such as PSA might potentially provide therapeutics for human inflammatory disorders on the basis of entirely novel biological principles.     

Advances in the phylogenesis of Agaricales and its higher ranks and strategies for establishing phylogenetic hypotheses

We present an overview of previous research results on the molecular phylogenetic analyses in Agaricales and its higher ranks （Agaricomycetes/Agaricomycotina/Basidiomycota） along with the most recent treatments of taxonomic systems in these taxa. Establishing phylogenetic hypotheses using DNA sequences, from which an understanding of the natural evolutionary relationships amongst clades may be derived, requires a robust dataset. It has been recognized that single-gene phylogenies may not truly represent organismal phylogenies, but the concordant phylogenetic genealogies from multiple-gene datasets can resolve this problem. The genes commonly used in mushroom phylogenetic research are summarized.     

The CRISPR/Cas bacterial immune system cleaves bacteriophage and plasmid DNA

Bacteria and Archaea have developed several defence strategies against foreign nucleic acids such as viral genomes and plasmids. Among them, clustered regularly interspaced short palindromic repeats (CRISPR) loci together with cas (CRISPR-associated) genes form the CRISPR/Cas immune system, which involves partially palindromic repeats separated by short stretches of DNA called spacers, acquired from extrachromosomal elements. It was recently demonstrated that these variable loci can incorporate spacers from infecting bacteriophages and then provide immunity against subsequent bacteriophage infections in a sequence-specific manner. Here we show that the Streptococcus thermophilus CRISPR1/Cas system can also naturally acquire spacers from a self-replicating plasmid containing an antibiotic-resistance gene, leading to plasmid loss. Acquired spacers that match antibiotic-resistance genes provide a novel means to naturally select bacteria that cannot uptake and disseminate such genes. We also provide in vivo evidence that the CRISPR1/Cas system specifically cleaves plasmid and bacteriophage double-stranded DNA within the proto-spacer, at specific sites. Our data show that the CRISPR/Cas immune system is remarkably adapted to cleave invading DNA rapidly and has the potential for exploitation to generate safer microbial strains.     

带预制空心板的半刚性复合节点的弯矩和转动能力预测方法

对带预制空心板的复合梁-柱节点结构性能的研究目前是新颖且无暂行的可用来预测其弯矩和转动能力的计算方法．在本文中,在足尺度测试和参数分析的基础上,提出了预测该类型复合节点的弯矩和转动能力的设计公式．对所提计算方法和足尺度测试结果进行了对比,结果吻合良好．     

Essay review

Benjamin Franklin, the colonial American, maintained a now little-known interest in geological questions for more than sixty years. He began as a follower of English theorists, but soon assimilated some of their ideas with original speculations and discoveries, particularly regarding earthquakes. Though Franklin became famous for his experiments with electricity, he never attempted to explain earthquakes as if they were electrical phenomena; others, however, did. Through his access to American materials, Franklin contributed significantly to the work of several English and French geological theorists. Though some of his own theories were ultimately of limited value, Franklin played an important role in the international science of his time. In addition to his other accomplishments, he was colonial America's foremost student of geology.