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排序方式: 共有160条查询结果,搜索用时 15 毫秒
41.
A physical map of the mouse genome 总被引:1,自引:0,他引:1
Gregory SG Sekhon M Schein J Zhao S Osoegawa K Scott CE Evans RS Burridge PW Cox TV Fox CA Hutton RD Mullenger IR Phillips KJ Smith J Stalker J Threadgold GJ Birney E Wylie K Chinwalla A Wallis J Hillier L Carter J Gaige T Jaeger S Kremitzki C Layman D Maas J McGrane R Mead K Walker R Jones S Smith M Asano J Bosdet I Chan S Chittaranjan S Chiu R Fjell C Fuhrmann D Girn N Gray C Guin R Hsiao L Krzywinski M Kutsche R Lee SS Mathewson C McLeavy C Messervier S Ness S Pandoh P Prabhu AL Saeedi P 《Nature》2002,418(6899):743-750
A physical map of a genome is an essential guide for navigation, allowing the location of any gene or other landmark in the chromosomal DNA. We have constructed a physical map of the mouse genome that contains 296 contigs of overlapping bacterial clones and 16,992 unique markers. The mouse contigs were aligned to the human genome sequence on the basis of 51,486 homology matches, thus enabling use of the conserved synteny (correspondence between chromosome blocks) of the two genomes to accelerate construction of the mouse map. The map provides a framework for assembly of whole-genome shotgun sequence data, and a tile path of clones for generation of the reference sequence. Definition of the human-mouse alignment at this level of resolution enables identification of a mouse clone that corresponds to almost any position in the human genome. The human sequence may be used to facilitate construction of other mammalian genome maps using the same strategy. 相似文献
42.
43.
Glöckner G Eichinger L Szafranski K Pachebat JA Bankier AT Dear PH Lehmann R Baumgart C Parra G Abril JF Guigó R Kumpf K Tunggal B Cox E Quail MA Platzer M Rosenthal A Noegel AA;Dictyostelium Genome Sequencing Consortium 《Nature》2002,418(6893):79-85
The genome of the lower eukaryote Dictyostelium discoideum comprises six chromosomes. Here we report the sequence of the largest, chromosome 2, which at 8 megabases (Mb) represents about 25% of the genome. Despite an A + T content of nearly 80%, the chromosome codes for 2,799 predicted protein coding genes and 73 transfer RNA genes. This gene density, about 1 gene per 2.6 kilobases (kb), is surpassed only by Saccharomyces cerevisiae (one per 2 kb) and is similar to that of Schizosaccharomyces pombe (one per 2.5 kb). If we assume that the other chromosomes have a similar gene density, we can expect around 11,000 genes in the D. discoideum genome. A significant number of the genes show higher similarities to genes of vertebrates than to those of other fully sequenced eukaryotes. This analysis strengthens the view that the evolutionary position of D. discoideum is located before the branching of metazoa and fungi but after the divergence of the plant kingdom, placing it close to the base of metazoan evolution. 相似文献
44.
Bone morphogenetic protein-3 is a negative regulator of bone density 总被引:13,自引:0,他引:13
Daluiski A Engstrand T Bahamonde ME Gamer LW Agius E Stevenson SL Cox K Rosen V Lyons KM 《Nature genetics》2001,27(1):84-88
Bone morphogenetic proteins (BMPs) are members of the transforming growth factor-beta (TGF-beta) superfamily. Many BMPs are produced in bone and show osteogenic activity, suggesting that they may be determinants of bone mass. BMP3 was originally purified from bone as osteogenin, which induces osteogenic differentiation. Recombinant BMP3 (rhBMP3) has no biological activity, however, leaving its role in skeletal growth unclear. Here we show that BMP3 is an antagonist of osteogenic BMPs: BMP3 dorsalizes Xenopus laevis embryos, inhibits BMP2-mediated induction of Msx2 and blocks BMP2-mediated differentiation of osteoprogenitor cells into osteoblasts. These effects appear to be mediated through activin receptors. Finally, Bmp3(-/-) mice have twice as much trabecular bone as wild-type littermates, indicating that BMP3, the most abundant BMP in adult bone, is a negative determinant of bone density. 相似文献
45.
Skarnes WC Rosen B West AP Koutsourakis M Bushell W Iyer V Mujica AO Thomas M Harrow J Cox T Jackson D Severin J Biggs P Fu J Nefedov M de Jong PJ Stewart AF Bradley A 《Nature》2011,474(7351):337-342
Gene targeting in embryonic stem cells has become the principal technology for manipulation of the mouse genome, offering unrivalled accuracy in allele design and access to conditional mutagenesis. To bring these advantages to the wider research community, large-scale mouse knockout programmes are producing a permanent resource of targeted mutations in all protein-coding genes. Here we report the establishment of a high-throughput gene-targeting pipeline for the generation of reporter-tagged, conditional alleles. Computational allele design, 96-well modular vector construction and high-efficiency gene-targeting strategies have been combined to mutate genes on an unprecedented scale. So far, more than 12,000 vectors and 9,000 conditional targeted alleles have been produced in highly germline-competent C57BL/6N embryonic stem cells. High-throughput genome engineering highlighted by this study is broadly applicable to rat and human stem cells and provides a foundation for future genome-wide efforts aimed at deciphering the function of all genes encoded by the mammalian genome. 相似文献
46.
Capak PL Riechers D Scoville NZ Carilli C Cox P Neri R Robertson B Salvato M Schinnerer E Yan L Wilson GW Yun M Civano F Elvis M Karim A Mobasher B Staguhn JG 《Nature》2011,470(7333):233-235
Massive clusters of galaxies have been found that date from as early as 3.9 billion years (3.9 Gyr; z = 1.62) after the Big Bang, containing stars that formed at even earlier epochs. Cosmological simulations using the current cold dark matter model predict that these systems should descend from 'protoclusters'-early overdensities of massive galaxies that merge hierarchically to form a cluster. These protocluster regions themselves are built up hierarchically and so are expected to contain extremely massive galaxies that can be observed as luminous quasars and starbursts. Observational evidence for this picture, however, is sparse because high-redshift protoclusters are rare and difficult to observe. Here we report a protocluster region that dates from 1 Gyr (z = 5.3) after the Big Bang. This cluster of massive galaxies extends over more than 13 megaparsecs and contains a luminous quasar as well as a system rich in molecular gas. These massive galaxies place a lower limit of more than 4 × 10(11) solar masses of dark and luminous matter in this region, consistent with that expected from cosmological simulations for the earliest galaxy clusters. 相似文献
47.
Greater Sage-Grouse ( Centrocercus urophasianus ) is a species of concern, and accurate population data are needed to monitor conservation management efforts. Conventional, ground-based lek counts are labor-intensive, expensive, and have several sources of potential error and bias, including the practical limits on number and distribution of leks counted. We tested aerial methods for photographing multiple leks during a single morning. We completed 14 aerial approaches to 6 leks in 2 different years using 2 different airplanes and altitudes. Grouse flushed from leks on 12 approaches when the airplane was within 200–300 m of the lek. In 2 instances, strutting grouse crouched and stayed on the lek. Our highest-resolution images increased our confidence in grouse identification but also decreased field-of-view coverage to the detriment of count accuracy. The methods we tested do not allow sage-grouse to be accurately counted, but the results provide information about sage-grouse responses to low-altitude airplane approaches and about useful image resolutions and fields of view. 相似文献
48.
A survey of terrestrial vertebrates was conducted at the Scotts Bluff National Monument (SBNM), Nebraska, to determine species composition, relative abundance, and distribution by habitat of the existing amphibians, reptiles, birds, and mammals. Various sampling methods were used to detect animal species richness and to estimate population densities. The seven major habitat types at SBNM contained 4 species of amphibians, 8 reptiles, 96 birds, and 28 mammals. The only endangered or threatened species observed was a dead bald eagle ( Haliaeetus leucocephalus ). The racer ( Coluber constrictor ) and prairie rattlesnake ( Crotalus viridis ) were the two most abundant snakes. The prairie falcon ( Falco mexicanus ) was a common raptor that nested in Scotts Bluff. Sympatric populations of mule deer ( Odocoileus hemionus ) and white-tailed deer ( Odocoileus virginianus ) appeared to be hybridizing. The riverine woodland contained the greatest number of fauna species with only 4% surface area of SBNM. Sharp-tailed grouse ( Tympanuchus phasianellus ) and pronghorn antelope ( Antilocapra americana ), absent from the Monument, are two potential native species for reintroduction. 相似文献
49.
Frazer KA Eskin E Kang HM Bogue MA Hinds DA Beilharz EJ Gupta RV Montgomery J Morenzoni MM Nilsen GB Pethiyagoda CL Stuve LL Johnson FM Daly MJ Wade CM Cox DR 《Nature》2007,448(7157):1050-1053
A dense map of genetic variation in the laboratory mouse genome will provide insights into the evolutionary history of the species and lead to an improved understanding of the relationship between inter-strain genotypic and phenotypic differences. Here we resequence the genomes of four wild-derived and eleven classical strains. We identify 8.27 million high-quality single nucleotide polymorphisms (SNPs) densely distributed across the genome, and determine the locations of the high (divergent subspecies ancestry) and low (common subspecies ancestry) SNP-rate intervals for every pairwise combination of classical strains. Using these data, we generate a genome-wide haplotype map containing 40,898 segments, each with an average of three distinct ancestral haplotypes. For the haplotypes in the classical strains that are unequivocally assigned ancestry, the genetic contributions of the Mus musculus subspecies--M. m. domesticus, M. m. musculus, M. m. castaneus and the hybrid M. m. molossinus--are 68%, 6%, 3% and 10%, respectively; the remaining 13% of haplotypes are of unknown ancestral origin. The considerable regional redundancy of the SNP data will facilitate imputation of the majority of these genotypes in less-densely typed classical inbred strains to provide a complete view of variation in additional strains. 相似文献
50.
Coghill EL Hugill A Parkinson N Davison C Glenister P Clements S Hunter J Cox RD Brown SD 《Nature genetics》2002,30(3):255-256
The construction of parallel archives of DNA and sperm from mice mutagenized with ethylnitrosurea (ENU) represents a potentially powerful and rapid approach for identifying point mutations in any gene in the mouse genome. We provide support for this approach and report the identification of mutations in the gene (Gjb2) encoding connexin 26, using archives established from the UK ENU mutagenesis program. 相似文献