A YAC-based physical map of the mouse genome.

A physical map of the mouse genome is an essential tool for both positional cloning and genomic sequencing in this key model system for biomedical research. Indeed, the construction of a mouse physical map with markers spaced at an average interval of 300 kb is one of the stated goals of the Human Genome Project. Here we report the results of a project at the Whitehead Institute/MIT Center for Genome Research to construct such a physical map of the mouse. We built the map by screening sequenced-tagged sites (STSs) against a large-insert yeast artificial chromosome (YAC) library and then integrating the STS-content information with a dense genetic map. The integrated map shows the location of 9,787 loci, providing landmarks with an average spacing of approximately 300 kb and affording YAC coverage of approximately 92% of the mouse genome. We also report the results of a project at the MRC UK Mouse Genome Centre targeted at chromosome X. The project produced a YAC-based map containing 619 loci (with 121 loci in common with the Whitehead map and 498 additional loci), providing especially dense coverage of this sex chromosome. The YAC-based physical map directly facilitates positional cloning of mouse mutations by providing ready access to most of the genome. More generally, use of this map in addition to a newly constructed radiation hybrid (RH) map provides a comprehensive framework for mouse genomic studies.     

The growth of mathematical knowledge—Introduction of convex bodies

The article addresses the topic of the growth of mathematical knowledge with a special focus on the question: How are mathematical objects introduced to mathematical practice? It takes as starting point a proposal made in a previous paper which is based on a case study on the introduction of Riemann surfaces. The claim is that (i) a new object first refers to previously accepted objects, and that (ii) reasoning is possible via a correspondence to the objects with reference to which it is introduced. In addition Riemann surfaces are geometrical objects, i.e., they are placed in a geometrical context, which makes new definitions possible. This proposal is tested on a case study on Minkowski’s introduction of convex bodies. The conclusion is that the proposal holds also for this example. In both cases we notice that in a first stage is a close connection between the new object and the objects it is introduced with reference to, and that in a later stage, the new object is given an independent definition. Even though the two cases display similarity in these respects, we also point to certain differences between the cases in the process of the first stage. Overall we notice the fruitfulness of representing problems in different contexts.     

No evidence for thick deposits of ice at the lunar south pole

Shackleton crater at the Moon's south pole has been suggested as a possible site of concentrated deposits of water ice, on the basis of modelling of bi-static radar polarization properties and interpretations of earlier Earth-based radar images. This suggestion, and parallel assumptions about other topographic cold traps, is a significant element in planning for future lunar landings. Hydrogen enhancements have been identified in the polar regions, but these data do not identify the host species or its local distribution. The earlier Earth-based radar data lack the resolution and coverage for detailed studies of the relationship between radar scattering properties, cold traps in permanently shadowed areas, and local terrain features such as the walls and ejecta of small craters. Here we present new 20-m resolution, 13-cm-wavelength radar images that show no evidence for concentrated deposits of water ice in Shackleton crater or elsewhere at the south pole. The polarization properties normally associated with reflections from icy surfaces in the Solar System were found at all the observed latitudes and are strongly correlated with the rock-strewn walls and ejecta of young craters, including the inner wall of Shackleton. There is no correlation between the polarization properties and the degree of solar illumination. If the hydrogen enhancement observed by the Lunar Prospector orbiter indicates the presence of water ice, then our data are consistent with the ice being present only as disseminated grains in the lunar regolith.     

Hydrology of Bear Lake Basin and its impact on the trophic state of Bear Lake, Utah-Idaho

Bear Lake is a large, relatively pristine lake located in a graben valley. The lacustrine environment is more than 35,000 years old. Over that period of time, the Bear River intermittently flowed into Bear Lake. Approximately 10,000 to 8,000 BP, the Bear River ceased flowing directly into the lake. Between 1912 and 1924, channels were dug that diverted Bear River flows into the lake. An analysis was conducted to determine the impacts of Bear River flows upon the hydrologic and nutrient budgets of the Bear Lake ecosystem. In addition, the resulting limnological conditions were evaluated. Based upon eight years of historical data (1976 to 1984), regression relationships were developed that allowed an estimation of the historical conditions in Bear Lake (1923 to present) with and without the influence of the Bear River.     

Ecological investigation of a suspected spawning site of Colorado squawfish on the Yampa River, Utah

On 5 July 1981, 13 adult Colorado squawfish were found in spawning condition at river mile 16.5 in the Yampa River, a major tributary to the Green River. An investigation was undertaken to quantitatively describe this section of the river to gain insights on the spawning requirements of this endangered species. The substrate at the suspected spawning site was cobble with large interstitial spaces devoid of organics, silts, or clays. It appeared that larvae of several fish species utilized these cobble areas and the associated voids. Diurnal sampling indicated that larval drift occurred between 0100 and 0125 hours. Substrate size also appeared to be a dominant factor in fish distribution. Feeding intensities of these fish corresponded to macroinvertebrate drift.         

Sources of variation in counts of meristic features of Yellowstone cutthroat trout ( Oncorhynchus clarki bouvieri )

We determined variability in counts of meristic features (pyloric caecae, vertebrae, pelvic fin rays, gillrakers, basibranchial teeth, scales above the lateral line, and scales in the lateral series) of Yellowstone cutthroat trout ( Oncorhynchus clarki bouvieri ) by 3 independent readers, by the same reader on 3 different occasions, and among fish from 12 sampling sites within a 650-km 2 watershed. Genetic purity of the cutthroat trout was determined by electrophoretic analysis. Significant differences in meristic counts were observed among 3 readers and among sampling sites, but not among 3 occasions by a single reader. Scale counts were within the reported range for Yellowstone cutthroat trout, but counts of other structures (pyloric caecae, gillrakers, vertebrae) were as similar to rainbow trout as to Yellowstone cutthroat trout. Meristic counts identified the fish as cutthroat trout; however, variation among readers and sampling sites, as well as within the species, limits their use when identifying genetically pure cutthroat trout or assessing possible integration with rainbow trout.     

Transiting circumbinary planets Kepler-34 b and Kepler-35 b

Most Sun-like stars in the Galaxy reside in gravitationally bound pairs of stars (binaries). Although long anticipated, the existence of a 'circumbinary planet' orbiting such a pair of normal stars was not definitively established until the discovery of the planet transiting (that is, passing in front of) Kepler-16. Questions remained, however, about the prevalence of circumbinary planets and their range of orbital and physical properties. Here we report two additional transiting circumbinary planets: Kepler-34 (AB)b and Kepler-35 (AB)b, referred to here as Kepler-34 b and Kepler-35 b, respectively. Each is a low-density gas-giant planet on an orbit closely aligned with that of its parent stars. Kepler-34 b orbits two Sun-like stars every 289?days, whereas Kepler-35 b orbits a pair of smaller stars (89% and 81% of the Sun's mass) every 131?days. The planets experience large multi-periodic variations in incident stellar radiation arising from the orbital motion of the stars. The observed rate of circumbinary planets in our sample implies that more than ～1% of close binary stars have giant planets in nearly coplanar orbits, yielding a Galactic population of at least several million.