A new species of fossil Chrysothamnus (Asteraceae) from New Mexico

The new, presumably extinct species, Chrysothamnus pulchelloides, is formally described and illustrated. The plant materials came from Holocene packrat middens. Anatomical and phyletic relationships of the fossil species to extant taxa are discussed.     

A new variety of Centaurium namophilum (Gentianaceae) from the Great Basin

An expression of Centaurium namophilum (Gentianaceae), long confused with C. exaltatum in the Great Basin of the western United States, is described and designated as var. nevadense. It may be separated from the Death Valley region endemic, var. namophilum, by its broader leaves, its diffuse corymbose cyme, the ultimate peduncles that are longer than the flowers, its medium to deep rose pink corolla, and its stamens that equal or exceed the style and are only slightly exserted from the corolla-tube. The var. nevadense occurs from eastern California to western Utah, and from southeastern Oregon and adjacent Idaho south to the northern Mojave Desert of southeastern California. Centaurium exaltatum may be distinguished from the new variety by its broader, more elliptical leaves, dichotomous peduncles, paler pink or bluish and generally four-merous flowers, shorter and more blunt corolla lobes, and a thicker, more included style and stigma.     

Reproduction in the snake Lampropeltis pyromelana

Reproduction in L. pyromelana infralabialis Tanner is reported. Eggs were measured and weighed and incubation time and hatching reported. Hatchlings were measured and weighed, and feeding was observed.     

Length of western tent caterpillar egg masses and diameter of their associated stems

Stems bearing egg masses of the western tent caterpillar ( Malacosoma californicum ), collected in Arizona and northern New Mexico during 1977–1980, had mean diameters between 2.9 and 4 mm. Mean lengths of the egg masses were consistently between 11 and 14 mm.     

Stoneflies (Plecoptera) of the Black Hills of South Dakota and Wyoming, USA: distribution and zoogeographic affinities

The Black Hills of South Dakota and Wyoming are an insular mountain range completely surrounded by the Great Plains. The stonefly (Plecoptera) fauna of the Black Hills was surveyed and zoogeographic affinities examined. Twenty-seven species representing 22 genera and 6 families were found. Fifteen new state records for South Dakota and 2 for Wyoming are presented. Two species are removed from the South Dakota list. An analysis of the North American distribution of each species showed a strong relationship between the Black Hills and the Rocky Mountains, with much weaker relationships between the Black Hills and eastern and northern regions. Results of a logistic regression analysis comparing factors contributing to long-distance dispersal ability against presence/absence in the Black Hills were inconclusive. However, other evidence suggests that the Black Hills fauna is a result of expansion and subsequent vicariance of stonefly populations during Pleistocene climatic oscillations.     

Changes in kit fox–coyote–prey relationships in the Great Basin Desert, Utah

Variation in kit fox ( Vulpes macrotis ) population parameters can be influenced by vegetative cover and the distribution and abundance of other predator and prey species. Dramatic changes to Great Basin Desert habitats, which can potentially impact mammalian species, have occurred in some areas in Utah. We examined kit fox demographics and prey populations from 1999 to 2001 on Dugway Proving Ground (DPG), a U.S. Army facility in Utah, and compared some parameters to historical levels (1956–1958, 1966–1969). Adult survival rates were fairly consistent between 1999 and 2000 and between 1999 and 2001; however, survival was greater in 2001 than in 2000. Reproductive rates ranged from 1.0 to 3.8 pups per female in 1999–2000 and were similar to historical numbers (1.0–4.2 pups per female). We found a decrease in pre-whelping kit fox density from the 1960s (0.12 foxes ? km –2 ) to 1999–2001 (0.04 foxes ? km –2 ); however, densities were similar between the current study and the 1950s (0.08 foxes ? km –2 ). Using 9 years of data, we found density dependence between reproductive rates of the current year and annual fox density from the previous year. Using 7 years of data, we found a slight correlation between kit fox annual density and a 1-year lag in leporid abundance, even though leporid abundance was lower during the present study than it was historically. Compared to historical levels, current small mammal abundance and species composition has changed in several habitats. Kit fox breeding density and annual density were inversely correlated with coyote ( Canis latrans ) density. Changes to the landscape at DPG, especially due to invasion of cheatgrass ( Bromus tectorum ) and addition of artificial water sources, have caused a change in available kit fox habitat and prey species, and have increased the abundance of coyotes, the kit fox's major competitor.     

Breeding biology and flower visitors of the rare White River penstemon, Penstemon scariosus var. albifluvis (Scrophulariaceae)

We studied the breeding system and flower visitors of White River penstemon, a rare endemic from the Uintah Basin of eastern Utah and western Colorado. Bagging treatments and hand-pollination treatments showed that Penstemon scariosus var. albifluvis has a mixed mating system: while some seeds and fruits are produced through selfpollination (both autogamy and geitonogamy), significantly more are produced when flowers are cross-pollinated. The primary flower visitors, and likely pollinators, were several species of native twig- and ground-nesting bees in the families Apidae, Halictidae, and Megachilidae. We found no differences in fruit or seed production between open-pollinated controls and hand-outcrossed flowers, suggesting that pollinator visits were sufficient to maximize female reproductive success. Management plans to conserve White River penstemon must recognize that full reproductive success of this rare plant taxon relies on a suite of pollinating bees, and that the species richness and abundances of bee visitors should be maintained.     

Bayesian inference of ancient human demography from individual genome sequences

Whole-genome sequences provide a rich source of information about human evolution. Here we describe an effort to estimate key evolutionary parameters based on the whole-genome sequences of six individuals from diverse human populations. We used a Bayesian, coalescent-based approach to obtain information about ancestral population sizes, divergence times and migration rates from inferred genealogies at many neutrally evolving loci across the genome. We introduce new methods for accommodating gene flow between populations and integrating over possible phasings of diploid genotypes. We also describe a custom pipeline for genotype inference to mitigate biases from heterogeneous sequencing technologies and coverage levels. Our analysis indicates that the San population of southern Africa diverged from other human populations approximately 108-157 thousand years ago, that Eurasians diverged from an ancestral African population 38-64 thousand years ago, and that the effective population size of the ancestors of all modern humans was ～9,000.     

CEP152 is a genome maintenance protein disrupted in Seckel syndrome

Functional impairment of DNA damage response pathways leads to increased genomic instability. Here we describe the centrosomal protein CEP152 as a new regulator of genomic integrity and cellular response to DNA damage. Using homozygosity mapping and exome sequencing, we identified CEP152 mutations in Seckel syndrome and showed that impaired CEP152 function leads to accumulation of genomic defects resulting from replicative stress through enhanced activation of ATM signaling and increased H2AX phosphorylation.