Mesoscale conformational changes in the DNA-repair complex Rad50/Mre11/Nbs1 upon binding DNA

The human Rad50/Mre11/Nbs1 complex (hR/M/N) functions as an essential guardian of genome integrity by directing the proper processing of DNA ends, including DNA breaks. This biological function results from its ability to tether broken DNA molecules. hR/M/N's dynamic molecular architecture consists of a globular DNA-binding domain from which two 50-nm-long coiled coils protrude. The coiled coils are flexible and their apices can self-associate. The flexibility of the coiled coils allows their apices to adopt an orientation favourable for interaction. However, this also allows interaction between the tips of two coiled coils within the same complex, which competes with and frustrates the intercomplex interaction required for DNA tethering. Here we show that the dynamic architecture of hR/M/N is markedly affected by DNA binding. DNA binding by the hR/M/N globular domain leads to parallel orientation of the coiled coils; this prevents intracomplex interactions and favours intercomplex associations needed for DNA tethering. The hR/M/N complex thus is an example of a biological nanomachine in which binding to its ligand, in this case DNA, affects the functional conformation of a domain located 50 nm distant.     

Bacterial serine proteases secreted by the autotransporter pathway: classification,specificity, and role in virulence

Serine proteases exist in eukaryotic and prokaryotic organisms and have emerged during evolution as the most abundant and functionally diverse group. In Gram-negative bacteria, there is a growing family of high molecular weight serine proteases secreted to the external milieu by a fascinating and widely employed bacterial secretion mechanism, known as the autotransporter pathway. They were initially found in Neisseria, Shigella, and pathogenic Escherichia coli, but have now also been identified in Citrobacter rodentium, Salmonella, and Edwardsiella species. Here, we focus on proteins belonging to the serine protease autotransporter of Enterobacteriaceae (SPATEs) family. Recent findings regarding the predilection of serine proteases to host intracellular or extracellular protein-substrates involved in numerous biological functions, such as those implicated in cytoskeleton stability, autophagy or innate and adaptive immunity, have helped provide a better understanding of SPATEs’ contributions in pathogenesis. Here, we discuss their classification, substrate specificity, and potential roles in pathogenesis.     

Simvastatin overcomes the resistance to serum withdrawal-induced apoptosis of lymphocytes from Alzheimer’s disease patients

Statins may exert beneficial effects on Alzheimer’s disease (AD) patients. Based on the antineoplastic and apoptotic effects of statins in a number of cell types, we hypothesized that statins may be able to protect neurons by controlling the regulation of cell cycle and/or apoptosis. A growing body of evidence indicates that neurodegeneration involves the cell-cycle activation in postmitotic neurons. Failure of cell-cycle control is not restricted to neurons in AD patients, but occurs in peripheral cells as well. For these reasons, we studied the role of simvastatin (SIM) on cell survival/death in lymphoblasts from AD patients. We report here that SIM induces apoptosis in AD lymphoblasts deprived of serum. SIM interacts with PI3K/Akt and ERK1/2 signaling pathways thereby decreasing the serum withdrawal-enhanced levels of the CDK inhibitor p21^Cip1 (p21) and restoring the vulnerability of AD cells to trophic factor deprivation.     

Vegetation changes after livestock grazing exclusion and shrub control in the southern Chihuahuan Desert

Vegetation cover and production were evaluated after nearly 7 years of livestock grazing exclusion and shrub control in an area with a long history of heavy livestock grazing in the southern Chihuahuan Desert, Mexico. An exclosure was established to prevent livestock grazing. In half of the excluded area, the main shrub, Larrea tridentata , was mechanically controlled. Outside the exclosure, heavy livestock grazing occurred as customary and shrubs were not controlled. Absence of grazing resulted in 50% higher grass cover and 35% higher total biomass. Larrea tridentata cover was twice as high on the grazed area as on the ungrazed area. Vegetation cover was dominated by grasses (42%) in the ungrazed area, whereas in the grazed area, cover was equally divided between grasses (28%) and shrubs (27%). Shrub control did not affect vegetation cover or herbage production. Multivariate analysis confirmed that inside the excluded area, shrub control had little impact on the plant community. The effect of grazing, however, clearly distinguished the community outside the exclosure from that inside the exclosure.     

Description,molecular phylogeny,and natural history of a new kleptoparasitic species of gelechiid moth (Lepidoptera) associated with Melastomataceae galls in Brazil

The male, female, pupa and larva of a new species of Gelechiidae (Lepidoptera), Locharcha opportuna Moreira and Becker, are described and illustrated with the aid of optical and scanning electron microscopy. A preliminary analysis of mitochondrial DNA sequences including members of related lineages is also provided. The immature stages are associated with galls induced by a species of Palaeomystella Fletcher (Lepidoptera: Momphidae) on Tibouchina sellowiana (Cham.) Cogn. (Melastomataceae), endemic to the Atlantic Rainforest. Larvae are kleptoparasitic, usurping the gall internal space and thereafter feeding on the internal tissues. By determining the variation in population density of both species and following gall development individually throughout ontogeny under field conditions, we demonstrated that the kleptoparasite completes its life cycle inside galls induced by Palaeomystella, where pupation occurs. The variation in seasonal abundance of the kleptoparasite is tied to that of the cecidogenous species, with their corresponding peaks in density occurring sequentially.

http://zoobank.org/urn:lsid:zoobank.org:pub:525F6D52-8CE1-47D1-A0D9-78B564DF5565     

Observations on the nesting behaviour of the spider wasp Eragenia congrua (Hymenoptera: Pompilidae), with the first record of the host

We describe, for the first time, the nesting behaviour of an Eragenia spider wasp, Eragenia congrua, based on field observations in the Brazilian Amazon. This species was observed nesting in holes at the base of the trunk of a Jacaranda copaia tree and provisioning nests with both amputated and non-amputated species of undetermined Corinna sp. (Corinnidae) spiders. The spiders are carried forward and grasped at the base of the chelicerae. Nesting is gregarious with females nesting in the same small area on successive days.     

The impact of microRNAs on protein output

MicroRNAs are endogenous approximately 23-nucleotide RNAs that can pair to sites in the messenger RNAs of protein-coding genes to downregulate the expression from these messages. MicroRNAs are known to influence the evolution and stability of many mRNAs, but their global impact on protein output had not been examined. Here we use quantitative mass spectrometry to measure the response of thousands of proteins after introducing microRNAs into cultured cells and after deleting mir-223 in mouse neutrophils. The identities of the responsive proteins indicate that targeting is primarily through seed-matched sites located within favourable predicted contexts in 3' untranslated regions. Hundreds of genes were directly repressed, albeit each to a modest degree, by individual microRNAs. Although some targets were repressed without detectable changes in mRNA levels, those translationally repressed by more than a third also displayed detectable mRNA destabilization, and, for the more highly repressed targets, mRNA destabilization usually comprised the major component of repression. The impact of microRNAs on the proteome indicated that for most interactions microRNAs act as rheostats to make fine-scale adjustments to protein output.