Complete genome sequence of Salmonella enterica serovar Typhimurium LT2.

Salmonella enterica subspecies I, serovar Typhimurium (S. typhimurium), is a leading cause of human gastroenteritis, and is used as a mouse model of human typhoid fever. The incidence of non-typhoid salmonellosis is increasing worldwide, causing millions of infections and many deaths in the human population each year. Here we sequenced the 4,857-kilobase (kb) chromosome and 94-kb virulence plasmid of S. typhimurium strain LT2. The distribution of close homologues of S. typhimurium LT2 genes in eight related enterobacteria was determined using previously completed genomes of three related bacteria, sample sequencing of both S. enterica serovar Paratyphi A (S. paratyphi A) and Klebsiella pneumoniae, and hybridization of three unsequenced genomes to a microarray of S. typhimurium LT2 genes. Lateral transfer of genes is frequent, with 11% of the S. typhimurium LT2 genes missing from S. enterica serovar Typhi (S. typhi), and 29% missing from Escherichia coli K12. The 352 gene homologues of S. typhimurium LT2 confined to subspecies I of S. enterica-containing most mammalian and bird pathogens-are useful for studies of epidemiology, host specificity and pathogenesis. Most of these homologues were previously unknown, and 50 may be exported to the periplasm or outer membrane, rendering them accessible as therapeutic or vaccine targets.     

Size-manipulat ion, compacti on and electrical properties of barium manganite nanorods synthesized via the CHM method

A composite-hydroxide mediated method was employed to synthesize barium manganite nanorods.Diameter,surface smoothness and uniformity of these nanorods were optimized by varying reaction temperature and reaction time.The rods with an average diameter of 200 nm and length of1–1.5 μm were obtained at optimum conditions of 200 1C/48 h.The dielectric study of these rods reveals that they have higher value of dielectric constant at lower frequencies which was attributed to the interfacial and rotational type polarizations.Similarly,the increase in dielectric constant with temperature was attributed to the thermal activation of such polarizations.Furthermore,the analysis of ln(J) vs.E1/2characteristics in the temperature range of 300–400 K shows that possible operative conduction mechanism was of Poole–Frenkel type.The value of βexp was found to be 4.85 times greater than the expected theoretical value of feld lowering coeffcient with an internal feld enhancement factor ofα2 23.5.This high value of βexp may be due to some localized electric felds existing inside the sample.     

Exploring Options for Enhancement of Social Dialogue Between the Turkish and Greek Communities in Cyprus Using the Structured Dialogic Design Process

This paper summarizes results of a co-laboratory that took place 33 months after the negative outcome of the referendum on the UN’s proposal for the solution of the Cyprus problem, and which was a follow-up (3 months later) of a previous co-laboratory. The earlier co-laboratory explored factors contributing to the increasing gap between the two conflicting communities. The co-laboratory reported here engaged relevant stakeholders (peace pioneers, academics, business people, activists and others representing the Turkish and Greek speaking communities of Cyprus) to come up with options aiming to enhance the social dialogue between the two communities. The Structured Dialogic Design Process was used to structure 27 proposed options and develop an influence map. The deep drivers, i.e., most influential factors, determined decisions taken by the participating peace pioneers regarding their future interventions. The results are also discussed within the framework of current (analysis reflects the political situation during the period reported here) political developments.     

Zr-pillared montmoril lonite supported cobalt nanoparticles for Fischer – Tropsch synthesis

In this article Fischer–Tropsch(FT) synthesis was studied over cobalt nanoparticles supported on modifed Montmorillonite(Zr-PILC).Co-loaded/Zr-PILC catalysts were synthesized by hydrothermal methods and were characterized by XRD,XRF,BET,H2-TPR,TGA and SEM techniques.FT reactions were carried out in fxed bed microreactor(T 225 1C,260 1C and 275 1C,P 1,5 and 10 bars).The FT-products obtained over Co-loaded/Zr-PILC catalysts showed increased selectivity of C2–C12hydrocarbons and decreased selectivity towards CH4and higher molecular weight hydrocarbons(C21) at a TOS of 2–30 h as compared to the Co-loaded/NaMMT catalysts.With increase in reaction temperature from225 1C to 275 1C,CO-conversion and CH4selectivity increases while that of C5+hydrocarbons decreases.Decrease in CH4selectivity while increase in C5+hydrocarbons and CO-conversion were observed on increasing the pressure of reaction.     

The DNA sequence, annotation and analysis of human chromosome 3

After the completion of a draft human genome sequence, the International Human Genome Sequencing Consortium has proceeded to finish and annotate each of the 24 chromosomes comprising the human genome. Here we describe the sequencing and analysis of human chromosome 3, one of the largest human chromosomes. Chromosome 3 comprises just four contigs, one of which currently represents the longest unbroken stretch of finished DNA sequence known so far. The chromosome is remarkable in having the lowest rate of segmental duplication in the genome. It also includes a chemokine receptor gene cluster as well as numerous loci involved in multiple human cancers such as the gene encoding FHIT, which contains the most common constitutive fragile site in the genome, FRA3B. Using genomic sequence from chimpanzee and rhesus macaque, we were able to characterize the breakpoints defining a large pericentric inversion that occurred some time after the split of Homininae from Ponginae, and propose an evolutionary history of the inversion.     

Optimization of specificity in a cellular protein interaction network by negative selection

Most proteins that participate in cellular signalling networks contain modular protein-interaction domains. Multiple versions of such domains are present within a given organism: the yeast proteome, for example, contains 27 different Src homology 3 (SH3) domains. This raises the potential problem of cross-reaction. It is generally thought that isolated domain-ligand pairs lack sufficient information to encode biologically unique interactions, and that specificity is instead encoded by the context in which the interaction pairs are presented. Here we show that an isolated peptide ligand from the yeast protein Pbs2 recognizes its biological partner, the SH3 domain from Sho1, with near-absolute specificity--no other SH3 domain present in the yeast genome cross-reacts with the Pbs2 peptide, in vivo or in vitro. Such high specificity, however, is not observed in a set of non-yeast SH3 domains, and Pbs2 motif variants that cross-react with other SH3 domains confer a fitness defect, indicating that the Pbs2 motif might have been optimized to minimize interaction with competing domains specifically found in yeast. System-wide negative selection is a subtle but powerful evolutionary mechanism to optimize specificity within an interaction network composed of overlapping recognition elements.     

Ballistic carbon nanotube field-effect transistors

A common feature of the single-walled carbon-nanotube field-effect transistors fabricated to date has been the presence of a Schottky barrier at the nanotube--metal junctions. These energy barriers severely limit transistor conductance in the 'ON' state, and reduce the current delivery capability--a key determinant of device performance. Here we show that contacting semiconducting single-walled nanotubes by palladium, a noble metal with high work function and good wetting interactions with nanotubes, greatly reduces or eliminates the barriers for transport through the valence band of nanotubes. In situ modification of the electrode work function by hydrogen is carried out to shed light on the nature of the contacts. With Pd contacts, the 'ON' states of semiconducting nanotubes can behave like ohmically contacted ballistic metallic tubes, exhibiting room-temperature conductance near the ballistic transport limit of 4e(2)/h (refs 4-6), high current-carrying capability (approximately 25 micro A per tube), and Fabry-Perot interferences at low temperatures. Under high voltage operation, the current saturation appears to be set by backscattering of the charge carriers by optical phonons. High-performance ballistic nanotube field-effect transistors with zero or slightly negative Schottky barriers are thus realized.     

Phylogenetic relationships of native and introduced Bemisia tabaci (Homoptera:Aleyrodidae) from China and India based on mtCOI DNA sequencing and host plant comparisons

Phylogenetic relationships for Bemisia tabaci were reconstructed by analysis of a ～780 bp fragment of the mitochondrial cytochrome oxidase I (mtCOI) gene with an emphasis on geographic range and distribution among eight eudicot plant families that are common hosts of B. tabaci worldwide to elucidate key phylogeographic linkages between populations extant in China (n=31) and India (n=34). Bootstrap values for the Maximum Parsimony tree were highly robust for all major nodes involving the major Asian clade, subgroups, and sister groups within, at 92%—100%. Between-clade distances for the Southeast Asia and three other major clades, e.g. from sub-Sahara Africa, North Africa-Mediterranean, and the Americas, were approximately >16% divergent. Two major Asian subgroups (I, II) were resolved, which represented populations indigenous to the region, comprising two (I a, I b) and five (II a—e) sister groups, respectively, which diverged by 11%. Two distinct populations from sunflower in Hyderabad grouped separately within the two Asian subgroups. All other populations grouped uniquely within Asian subgroup II or I. The "B" biotype was identified in 23 collections from China at 97.3%—99.5% nucleotide identity with "B" biotype reference sequences; it was not identified in collections from India. The majority of haplotypes were associated with 3—4 plant families, with one exception that for sister group IId (sesame, India), it might be monophagous. Thus, B. tabaci from the southeastern and near eastern regions of the Asian continent comprise of a large number of ancestral, richly divergent, mostly polyphagous populations. This region is therefore hypothesized to constitute an important Old World center of diversification for the B. tabaci complex, together with sub-Saharan Africa.     

Scenario planning: An investigation of the construct and its measurement

Scenario‐planning academicians and practitioners have been observing for more than three decades the importance of this method in dealing with environmental uncertainty. However, there has been no valid scale that may help organizational leaders to act in practice. Our review of prior studies identifies some problems related to conceptualization, reliability, and validity of this construct. We address these concerns by developing and validating a measure of scenario planning based on Churchill's paradigm (Journal of Marketing Research, 1979, 16, 64–73). Our data analysis follows from a sample of 133 managers operating in the healthcare field in France. To validate our scale, we used three approaches: first, an exploratory factor analysis; second, an examination of psychometric proprieties of all dimensions; and third, a confirmatory factor analysis. The results of this study indicate that scenario planning is a multidimensional construct composed of three dimensions: information acquisition, knowledge dissemination, and scenario development and strategic choices.