Cobalt doped ZrO2 decorated multiwalled carbon nanotube: A promising nanocatalyst for photodegradation of indigo carmine and eosin Y dyes

This paper reports the degradation of indigo carmine and eosin Y dyes in water, catalyzed by cobalt and multiwalled carbon nanotube modified zirconium oxide nanocomposite(Co-ZrO_2-MWCNTs) under simulated visible light. The bare ZrO_2,ZrO_2-MWCNTs, Co-ZrO_2 and Co-ZrO_2-MWCNTs with different percentage compositions of cobalt were synthesized by homogeneous co-precipitation method. Characterization of the prepared nanocomposites was carried out using X-Ray powder Diffraction(XRD), Fourier Transformer Infrared(FTIR) Spectroscopy, Transmission Electron Microscopy(TEM), Raman Spectroscopy,(UV–Vis)-Spectroscopy and Energy Dispersive Spectroscopy(EDS) for their structure, formation,morphology, size and elemental analysis. The experimental results indicated that all the cobalt and MWCNTs modified nanocomposites demonstrated higher photocatalytic activities compared to the bare ZrO_2. The most efficient catalyst(0.5% Co-ZrO_2-MWCNTs) with the band gap and Ka values of 5.21 e V and 16.86*10~(-3) min~(-1) respectively exhibited 98% degradation efficiency toward indigo carmine and 87% toward eosin Y in 180 min.     

Intrinsic motions along an enzymatic reaction trajectory

The mechanisms by which enzymes achieve extraordinary rate acceleration and specificity have long been of key interest in biochemistry. It is generally recognized that substrate binding coupled to conformational changes of the substrate-enzyme complex aligns the reactive groups in an optimal environment for efficient chemistry. Although chemical mechanisms have been elucidated for many enzymes, the question of how enzymes achieve the catalytically competent state has only recently become approachable by experiment and computation. Here we show crystallographic evidence for conformational substates along the trajectory towards the catalytically competent 'closed' state in the ligand-free form of the enzyme adenylate kinase. Molecular dynamics simulations indicate that these partially closed conformations are sampled in nanoseconds, whereas nuclear magnetic resonance and single-molecule fluorescence resonance energy transfer reveal rare sampling of a fully closed conformation occurring on the microsecond-to-millisecond timescale. Thus, the larger-scale motions in substrate-free adenylate kinase are not random, but preferentially follow the pathways that create the configuration capable of proficient chemistry. Such preferred directionality, encoded in the fold, may contribute to catalysis in many enzymes.     

An integrated model of kimberlite ascent and eruption

Diatremes are carrot-shaped bodies forming the upper parts of very deep magmatic intrusions of kimberlite rock. These unusual, enigmatic and complex features are famous as the source of diamonds. Here we present a new model of kimberlite ascent and eruption, emphasizing the extremely unsteady nature of this process to resolve many of the seemingly contradictory characteristics of kimberlites and diatremes. Dyke initiation in a deep CO2-rich source region in the mantle leads to rapid propagation of the dyke tip, below which CO2 fluid collects, with a zone of magmatic foam beneath. When the tip breaks the surface of the ground, gas release causes a depressurization wave to travel into the magma. This wave implodes the dyke walls, fragments the magma, and creates a 'ringing' fluidization wave. Together, these processes form the diatreme. Catastrophic magma chilling seals the dyke. No precursor to the eruption is felt at the surface and the processes are complete in about an hour.     

Food web structure, energetics, and importance of allochthonous carbon in a desert cavernous limnocrene: Devils Hole, Nevada

We tested the hypothesis that allochthonous carbon is important in the diet of the endemic pupfish Cyprinodon diabolis over a 3-year period in Devils Hole, Nevada. Devils Hole is a cavernous limnocrene located in the Mojave Desert approximately 15 m below the land surface and receives direct solar radiation <7% of the total time during the year. The system is dominated by filamentous cyanobacteria in the summer and supports about 15 invertebrate species and the endemic pupfish C. diabolis . We examined food web structure and measured autochthonous carbon production and entry of allochthonous carbon with funnel traps. Stable isotopes were used to compare contributions of each carbon source. Allochthonous carbon contributed 2971 kj ⋅ yr -1 (60%) of the total available energy to the food web compared to only 2000 kj ⋅ yr -1 autochthonous production. A major stochastic rain event delivered more terrestrial carbon to Devils Hole in l hour than annual allochthonous carbon, estimated from data collected with funnel traps. Mixing models with δ 15 N, δ 13 C, and δ 34 S showed a seasonal shift in diet for C. diabolis from filamentous cyanobacteria in the summer to the collector/gathering insect Stenelmis calida in the winter. Stenelmis tissue had high proportions of allochthonous plant carbon in the winter.     

The montane bee fauna of north central Washington, USA, with floral associations

The mountains of north central Washington contain a variety of habitat types, from shrubsteppe to high alpine meadows. While native bee surveys of some surrounding areas like the Columbia Basin are fairly complete, little work has been done in the mountains of north central Washington to document the diversity of bees found therein. We conducted a survey of native bees in the Tonasket Ranger District of the Okanogan-Wenatchee National Forest during summer 2004. Collections yielded a diverse bee fauna (140 species in 24 genera) visiting diverse floral elements (57 plant species in 18 families). These preliminary data suggest that a rich bee fauna exists in the Okanogan Basin and surrounding mountains.     

Base excision repair and design of small molecule inhibitors of human DNA polymerase β

Base excision repair (BER) can protect a cell after endogenous or exogenous genotoxic stress, and a deficiency in BER can render a cell hypersensitive to stress-induced apoptotic and necrotic cell death, mutagenesis, and chromosomal rearrangements. However, understanding of the mammalian BER system is not yet complete as it is extraordinarily complex and has many back-up processes that complement a deficiency in any one step. Due of this lack of information, we are unable to make accurate predictions on therapeutic approaches targeting BER. A deeper understanding of BER will eventually allow us to conduct more meaningful clinical interventions. In this review, we will cover historical and recent information on mammalian BER and DNA polymerase β and discuss approaches toward development and use of small molecule inhibitors to manipulate BER. With apologies to others, we will emphasize results obtained in our laboratory and those of our collaborators.     

Observations of reproduction in mountain lions from Nebraska

Occurrences of mountain lions ( Puma concolor ) in Nebraska have been steadily increasing; however, reproductive activity in mountain lions has not been documented in the state. We present the first evidence of mountain lion reproduction in Nebraska since mountain lions recolonized the state in the early 1990s. On 28 February 2007, a spotted kitten was hit by a vehicle in northwestern Nebraska; and based on body length and weight, we estimate its age at 3.9 months. On 20 December 2008, a female mountain lion and spotted kitten were photographed in the northwestern part of the state. On 9 May 2009, a female mountain lion with a juvenile was also photographed. All records were from the Pine Ridge region of Dawes County, Nebraska. Our records suggest that mountain lions are establishing a permanent population in at least one region of Nebraska.     

Participation of DNA repair in the response to 5-fluorouracil

The anti-metabolite 5-fluorouracil (5-FU) is employed clinically to manage solid tumors including colorectal and breast cancer. Intracellular metabolites of 5-FU can exert cytotoxic effects via inhibition of thymidylate synthetase, or through incorporation into RNA and DNA, events that ultimately activate apoptosis. In this review, we cover the current data implicating DNA repair processes in cellular responsiveness to 5-FU treatment. Evidence points to roles for base excision repair (BER) and mismatch repair (MMR). However, mechanistic details remain unexplained, and other pathways have not been exhaustively interrogated. Homologous recombination is of particular interest, because it resolves unrepaired DNA intermediates not properly dealt with by BER or MMR. Furthermore, crosstalk among DNA repair pathways and S-phase checkpoint signaling has not been examined. Ongoing efforts aim to design approaches and reagents that (i) approximate repair capacity and (ii) mediate strategic regulation of DNA repair in order to improve the efficacy of current anticancer treatments. Received 08 September 2008; received after revision 25 September 2008; accepted 03 October 2008     

The E-site story: the importance of maintaining two tRNAs on the ribosome during protein synthesis

In the sixties James Watson suggested a twosite model for the ribosome comprising the P site for the peptidyl transfer RNA (tRNA) before peptide-bond formation and the A site, where decoding takes place according to the codon exposed there. In the eighties a third tRNA binding site was detected, the E site, which was specific for deacylated tRNA and turned out to be a universal feature of ribosomes. However, despite having three tRNA binding sites, only two tRNAs occupy the ribosome at a time during protein synthesis: at the A and P sites before translocation (PRE state) and at the P and E sites after translocation (POST state). The importance of having two tRNAs in the POST state has been revealed during the last 25 years, showing that the E site contributes two fundamental features: (i) the fact that incorporation of a wrong amino acid is not harmful for the cell (only 1 in about 400 misincorporations destroys the function of a protein) stems from the presence of an E-tRNA; (ii) maintenance of the reading frame is one of the most remarkable achievements of the ribosome, essential for faithful translation of the genetic information. The presence of the POST state E-tRNA prevents loss of the reading frame. Received 14 March 2006; received after revision 8 June 2006; accepted 4 August 2006