Pleiotropic scaling of gene effects and the 'cost of complexity'

As perceived by Darwin, evolutionary adaptation by the processes of mutation and selection is difficult to understand for complex features that are the product of numerous traits acting in concert, for example the eye or the apparatus of flight. Typically, mutations simultaneously affect multiple phenotypic characters. This phenomenon is known as pleiotropy. The impact of pleiotropy on evolution has for decades been the subject of formal analysis. Some authors have suggested that pleiotropy can impede evolutionary progress (a so-called 'cost of complexity'). The plausibility of various phenomena attributed to pleiotropy depends on how many traits are affected by each mutation and on our understanding of the correlation between the number of traits affected by each gene substitution and the size of mutational effects on individual traits. Here we show, by studying pleiotropy in mice with the use of quantitative trait loci (QTLs) affecting skeletal characters, that most QTLs affect a relatively small subset of traits and that a substitution at a QTL has an effect on each trait that increases with the total number of traits affected. This suggests that evolution of higher organisms does not suffer a 'cost of complexity' because most mutations affect few traits and the size of the effects does not decrease with pleiotropy.     

Host specificity of Lepidoptera in tropical and temperate forests

For numerous taxa, species richness is much higher in tropical than in temperate zone habitats. A major challenge in community ecology and evolutionary biogeography is to reveal the mechanisms underlying these differences. For herbivorous insects, one such mechanism leading to an increased number of species in a given locale could be increased ecological specialization, resulting in a greater proportion of insect species occupying narrow niches within a community. We tested this hypothesis by comparing host specialization in larval Lepidoptera (moths and butterflies) at eight different New World forest sites ranging in latitude from 15 degrees S to 55 degrees N. Here we show that larval diets of tropical Lepidoptera are more specialized than those of their temperate forest counterparts: tropical species on average feed on fewer plant species, genera and families than do temperate caterpillars. This result holds true whether calculated per lepidopteran family or for a caterpillar assemblage as a whole. As a result, there is greater turnover in caterpillar species composition (greater beta diversity) between tree species in tropical faunas than in temperate faunas. We suggest that greater specialization in tropical faunas is the result of differences in trophic interactions; for example, there are more distinct plant secondary chemical profiles from one tree species to the next in tropical forests than in temperate forests as well as more diverse and chronic pressures from natural enemy communities.     

基于场景的软构件自动化测试模型研究

随着软构件技术的快速发展,聚集软构件设计复杂软件系统的软件开发方法日趋成熟.如何利用系统架构和软构件的可靠性分析软件系统的可靠性成为一个亟待解决的问题.提出了一种基于场景的软构件自动化测试模型,给出基于统一建模语言UML的顺序图构造测试场景具体方法,并对基于UML顺序图构造测试场景方法的有效性进行了分析.     

xnd-1 regulates the global recombination landscape in Caenorhabditis elegans

Meiotic crossover (CO) recombination establishes physical linkages between homologous chromosomes that are required for their proper segregation into developing gametes, and promotes genetic diversity by shuffling genetic material between parental chromosomes. COs require the formation of double strand breaks (DSBs) to create the substrate for strand exchange. DSBs occur in small intervals called hotspots and significant variation in hotspot usage exists between and among individuals. This variation is thought to reflect differences in sequence identity and chromatin structure, DNA topology and/ or chromosome domain organization. Chromosomes show different frequencies of nondisjunction (NDJ), reflecting inherent differences in meiotic crossover control, yet the underlying basis of these differences remains elusive. Here we show that a novel chromatin factor, X non-disjunction factor 1 (xnd-1), is responsible for the global distribution of COs in C. elegans. xnd-1 is also required for formation of double-strand breaks (DSBs) on the X, but surprisingly XND-1 protein is autosomally enriched. We show that xnd-1 functions independently of genes required for X chromosome-specific gene silencing, revealing a novel pathway that distinguishes the X from autosomes in the germ line, and further show that xnd-1 exerts its effects on COs, at least in part, by modulating levels of H2A lysine 5 acetylation.     

A comparison of mosquito consumption and prey selection between least chub ( Iotichthys phlegethontis ) and western mosquitofish ( Gambusia affinis )

We compared mosquito consumption and prey selection between least chub ( Iotichthys phlegethontis ) and western mosquitofish ( Gambusia affinis ) to determine the potential of least chub as an indigenous replacement for mosquito control in Utah. Mosquito consumption was compared between the 2 species in 2 experiments. The first tested consumption at 3 ratios of pupae and larvae ( Culex sp.; 1:3, 3:4, and 1:1), and the second tested consumption at varying densities of larvae (967 larvae ? m–3 , 1354 larvae ? m–3 , and 2258 larvae ? m–3 [30, 42, and 70 larvae per 31-L tank, respectively]). Western mosquitofish consumed more mosquitoes at lower pupae-to-larvae ratios than least chub, but least chub consumed more mosquitoes as the ratio of pupae to larvae increased. Western mosquitofish consumed significantly more larvae than least chub at all densities. Prey selection was compared between least chub and western mosquitofish, either individually or in intraspecific pairs, when the fish were fed equal abundances of 3 prey items: mosquito larvae, Daphnia magna , and midge larvae ( Chironomid sp.). Least chub consumed significantly fewer total prey items for both the 1- and 2-fish trials; western mosquitofish consumed significantly more individuals of each prey type except for Daphnia magna in the 1-fish trials. Least chub and western mosquitofish demonstrated no selection for prey items, indicating that both fish would consume mosquito larvae at rates relative to abundance. Feeding habits demonstrated in this study indicated that least chub could be a potential replacement for western mosquitofish for mosquito control; however, field studies should be conducted to assess the ability of both species to control mosquitoes in a natural setting.     

Dwarf mistletoe-pandora moth interaction and its contribution to ponderosa pine mortality in Arizona

The interaction between Southwestern dwarf mistletoe, Arceuthobium vaginatum subspecies cryptopodum , infestation and defoliation by the pandora moth, Coloradia pandora pandora , on the Kaibab Plateau in Arizona was evaluated. Heavy defoliation of ponderosa pine, Pinus ponderosa , in 1979 and 1981 resulted in mortality of individual trees in areas of heavy dwarf mistletoe infestation. Postmortem evaluation of ponderosa pines indicated that dead trees had a significantly higher dwarf mistletoe rating than did nearby paired live trees. Of 25 tree pairs evaluated, only two live trees had higher dwarf mistletoe ratings than the paired dead tree. Mean dwarf mistletoe ratings were: live trees 2.9, dead trees 4.6 (6 class dwarf mistletoe rating system). Implications for management of the pandora moth are discussed.        

Role of livestock and black-tailed jackrabbits in changing abundance of Kochia americana

Normal 0 false false false EN-US X-NONE X-NONE MicrosoftInternetExplorer4 st1\:*{behavior:url(#ieooui) } /* Style Definitions */ table.MsoNormalTable {mso-style-name:"Table Normal"; mso-tstyle-rowband-size:0; mso-tstyle-colband-size:0; mso-style-noshow:yes; mso-style-priority:99; mso-style-qformat:yes; mso-style-parent:""; mso-padding-alt:0in 5.4pt 0in 5.4pt; mso-para-margin:0in; mso-para-margin-bottom:.0001pt; mso-pagination:widow-orphan; font-size:11.0pt; font-family:"Calibri","sans-serif"; mso-ascii-font-family:Calibri; mso-ascii-theme-font:minor-latin; mso-fareast-font-family:"Times New Roman"; mso-fareast-theme-font:minor-fareast; mso-hansi-font-family:Calibri; mso-hansi-theme-font:minor-latin; mso-bidi-font-family:"Times New Roman"; mso-bidi-theme-font:minor-bidi;} Historical accounts and matched photographs indicate sharp decline of once-abundant Kochia americana in eastern Great Basin vegetation since the early 1900s, most of the decline by the late 1950s. Exclosure data show further decline from 1957 to 1973, then some increase between 1970 and 1973 and 1976 and 1981. Utah sheep numbers, at maximum from 1925 to 1940 and declining steadily to the 1970s, may have induced the long-term changes. Black-tailed jackrabbits ( Lepus californicus ), could not have induced vegetation decline, but could have added to livestock pressure and abetted the trend. In 1972, rabbits near a cyclic high were indirectly estimated to completely utilize K. americana in Curlew Valley, northwestern Utah. In 1976–1977 at rabbit low, direct measurements show 4%–18% of plants browsed by late summer, about 30%–50% of herbage removed from browsed plants. The latter rose to 45%–82% by end of winter. Late-summer percent browsed may have risen slightly (11%–21%) in 1980–1981 at next rabbit high. Increase in K. americana density from 1973 to 1976, then a slight decrease from 1976 to 1980, suggests fluctuating K. americana abundance induced by rabbit browsing, superimposed on long-term K. americana decline and recovery.     

Retrovirus genomes methylated by mammalian but not bacterial methylase are non-infectious

The biological importance of DNA methylation for gene expression in eukaryotes is becoming increasingly evident, and a direct role of methylation in gene expression has been suggested by an analysis of the infectivity of integrated retroviral genomes in a transfection assay. These studies, however, did not address whether specific methylatable residues are involved in gene regulation. Methylation by sequence-specific bacterial DNA methylases has been shown to suppress the expression of some genes, but not others. To investigate the effect of methylation on gene expression without having to rely on sequence-specific methylases, a rat liver enzyme was used to methylate in vitro all C-G dinucleotides of a proviral genomic clone. This treatment reduced the biological activity of Moloney murine leukaemia virus (M-MuLV) proviral DNA by more than three orders of magnitude, whereas complete methylation of 35 HpaII sites in the same DNA had only a marginal effect. The rat methylase-induced inactivation was reversible, as treatment of recipient cells with 5-azacytidine rendered the non-infectious viral genomes biologically active. This suggests that methylation in other C-G dinucleotides than those detectable with restriction enzymes can be crucial for gene expression.