Systematic documentation and analysis of human genetic variation in hemoglobinopathies using the microattribution approach

We developed a series of interrelated locus-specific databases to store all published and unpublished genetic variation related to hemoglobinopathies and thalassemia and implemented microattribution to encourage submission of unpublished observations of genetic variation to these public repositories. A total of 1,941 unique genetic variants in 37 genes, encoding globins and other erythroid proteins, are currently documented in these databases, with reciprocal attribution of microcitations to data contributors. Our project provides the first example of implementing microattribution to incentivise submission of all known genetic variation in a defined system. It has demonstrably increased the reporting of human variants, leading to a comprehensive online resource for systematically describing human genetic variation in the globin genes and other genes contributing to hemoglobinopathies and thalassemias. The principles established here will serve as a model for other systems and for the analysis of other common and/or complex human genetic diseases.     

Pierre Duhem’s epistemic aims and the intellectual virtue of humility: a reply to Ivanova

David Stump (2007) has recently argued that Pierre Duhem can be interpreted as a virtue epistemologist. Stump’s claims have been challenged by Milena Ivanova (2010) on the grounds that Duhem’s ‘epistemic aims’ are more modest than those of virtue epistemologists. I challenge Ivanova’s criticism of Stump by arguing that she not distinguish between ‘reliabilist’ and ‘responsibilist’ virtue epistemologies. Once this distinction is drawn, Duhem clearly emerges as a ‘virtue-responsibilist’ in a way that complements Ivanova’s positive proposal that Duhem’s ‘good sense’ reflects a conception of the ‘ideal scientist’. I support my proposal that Duhem is a ‘virtue-responsibilist’ by arguing that his rejection of the possibility of our producing a ‘perfect theory’ reflects the key responsibilist virtue of ‘intellectual humility’.     

Stimulation of olfactory ensheathing cell motility enhances olfactory axon growth

Axons of primary olfactory neurons are intimately associated with olfactory ensheathing cells (OECs) from the olfactory epithelium until the final targeting of axons within the olfactory bulb. However, little is understood about the nature and role of interactions between OECs and axons during development of the olfactory nerve pathway. We have used high resolution time-lapse microscopy to examine the growth and interactions of olfactory axons and OECs in vitro. Transgenic mice expressing fluorescent reporters in primary olfactory axons (OMP-ZsGreen) and ensheathing cells (S100ß-DsRed) enabled us to selectively analyse these cell types in explants of olfactory epithelium. We reveal here that rather than providing only a permissive substrate for axon growth, OECs play an active role in modulating the growth of pioneer olfactory axons. We show that the interactions between OECs and axons were dependent on lamellipodial waves on the shaft of OEC processes. The motility of OECs was mediated by GDNF, which stimulated cell migration and increased the apparent motility of the axons, whereas loss of OECs via laser ablation of the cells inhibited olfactory axon outgrowth. These results demonstrate that the migration of OECs strongly regulates the motility of axons and that stimulation of OEC motility enhances axon extension and growth cone activity.     

Ecological comparison of sympatric populations of sand lizards ( Cophosaurus texanus and Callisaurus draconoides )

Sympatric populations of Cophosaurus texanus and Callisaurus draconoides were periodically sampled from March 1973 through April 1974 at Burro Creek, Mohave County, Arizona. Callisaurus were also sampled at Rock Valley, Nye County, Nevada. Sex ratios were skewed in favor of males in the adult Cophosaurus but were equal in both adult populations of Callisaurus. Both species became sexually mature as yearlings. Mean clutch sizes were 3.55 (±0.83) for Cophosaurus, and 4.25 (±1.08) and 5.07 (±1.33) for Callisaurus at Burro Creek and Rock Valley respectively. Evidence of multiple clutches was exhibited by both species. Egg weight/body weight ratios for both species and clutch weight/body weight ratios for Cophosaurus were notably smaller than previously reported. At Burro Creek both species were highly insectivorus, with orthopterans comprising the largest food group of each. Niche overlap for food was high at the ordinal level, but at the familial level it is apparent that Callisaurus probably fed in the more xeric areas of the riparian habitat. No differences were found in the temperature responses of these two lizards. However, minor temporal separations and substantial spatial partitioning were observed. Callisaurus preferred sandy open areas, while Cophosaurus preferred the presence of some rocks and boulders.     

Trapping methods for rangeland insects in burned and unburned sites: a comparison

Different insect trapping methods were compared weekly on recently burned and nearby unburned rangeland in the Great Basin of western Utah. Flight traps (or wing traps) collected the most specimens (total = 4,916 at burned site, 4,384 at unburned site) but represented the fewest species (no more than 11 spp./wk at either site); this method was not recommended because of difficulty in removing specimens from adhesive. Water traps amassed the next largest number of specimens (￣x ± SE/wk = 150.9 ± 75.3 at burned site, 158.0 ± 66.4 at unburned site) and the most species (￣x ± SE/wk = 21.6 ± 6.4 at burned site, 35. 1 ± 4.5 at unburned site). The weekly collections from pitfall traps between the sites were significantly different (P < .05) in number of specimens (￣x ± SE/wk = 8.1 ± 1.5 at burned site, 19.7 ± 4.8 at unburned site) and species (￣x ± SE/wk = 4.7 ± 0.6 at burned site, 9.5 ± 2.0 at unburned site). Malaise traps were the most convenient. Black Malaise traps collected more specimens (￣x ± SE/wk = 99.8 ± 19.4 at burned site, 90.6 ± 16.4 at unburned site) and species (￣x ± SE/wk = 22.9 ± 3.9 at burned site, 19.4 ± 6.5 at unburned site) than white malaise traps (specimens: ￣x ± SE/wk = 72.1 ± 22.4 at burned site, 87.1 ± 31.2 at unburned site; species: ￣x ± SE/ wk = 19.7 ± 6.6 at burned site, 16.4 ± 5.4 at unburned site), although this difference was not significant.     

Selection of microhabitat by the red-backed vole, Clethrionomys gapperi

Clethrionomys gapperi were captured in microhabitats with greater densities of overall cover than at noncapture or random sites within the study area. Variables describing cover density and distance from free water were selected in a discriminant function analysis to differentiate between vole capture and noncapture sites. Vole capture sites had greater amounts of cover within 4 dm above ground surface and were further from standing water than noncapture sites. The preferential use by C. gapperi of microhabitats with greater densities of cover is in agreement with laboratory and field assessments of habitat use reported in the literature.     

Comparison of two roadside survey procedures for dwarf mistletoes on the Sawtooth National Forest, Idaho

Two roadside surveys were conducted for dwarf mistletoes parasitizing lodgepole pine and Douglas-fir on the Sawtooth National Forest, Idaho. One survey used variable-radius plots located less than 150 m from roads. The 2nd survey used variable-radius plots established at 200-m intervals along 1600-m transects run perpendicular to the same roads. Estimates of the incidence (percentage of trees infected and percentage of plots infested) and severity (average dwarf mistletoe rating) for both lodgepole pine and Douglas-fir dwarf mistletoes were not significantly different for the 2 survey methods. These findings are further evidence that roadside-plot surveys and transect-plot surveys conducted away from roads provide similar estimates of the incidence of dwarf mistletoes for large forested areas.     

Host-induced morphological variations in the strigeoid trematode Posthodiplostomum minimum (Trematoda: Diplostomatidae). II. Body measurements and tegument modifications

Normal 0 false false false EN-US X-NONE X-NONE MicrosoftInternetExplorer4 /* Style Definitions */ table.MsoNormalTable {mso-style-name:"Table Normal"; mso-tstyle-rowband-size:0; mso-tstyle-colband-size:0; mso-style-noshow:yes; mso-style-priority:99; mso-style-qformat:yes; mso-style-parent:""; mso-padding-alt:0in 5.4pt 0in 5.4pt; mso-para-margin:0in; mso-para-margin-bottom:.0001pt; mso-pagination:widow-orphan; font-size:11.0pt; font-family:"Calibri","sans-serif"; mso-ascii-font-family:Calibri; mso-ascii-theme-font:minor-latin; mso-fareast-font-family:"Times New Roman"; mso-fareast-theme-font:minor-fareast; mso-hansi-font-family:Calibri; mso-hansi-theme-font:minor-latin; mso-bidi-font-family:"Times New Roman"; mso-bidi-theme-font:minor-bidi;} Extensive feeding experiments were undertaken to determine if physiological host specificity was a major characteristic of Posthodiplostomum minimum. This involved the feeding of experimentally infected sunfish livers containing metacercariae of P. minimum to amphibian, reptilian, avian and mammalian hosts. Host - induced morphological variations of adult P. minimum were shown to be associated with the genus and class of host employed as well as with the inherent variability of P. minimum exclusive of host factors. Morphological characters such as body size and shape and tegumental surface and spines are indicated as undergoing morphological variation. Of all the experimental definitive hosts used, avian and mammalian are the most suitable for normal development of P. minimum. Amphibian and reptilian hosts demonstrate marked variation in the adult worm development usually manifested by pronounced size decrease.     

Site and stand characteristics related to white pine blister rust in high-elevation forests of southern Idaho and western Wyoming

Successful infection of white pine species by white pine blister rust (WPBR) is contingent upon environmental conditions that are favorable to the spread and development of Cronartium ribicola . Site and stand factors related to this process have been studied elsewhere within the distribution of the disease, but few studies have concentrated on the high-elevation white pine forests of southern Idaho and western Wyoming. We found that mean summer precipitation, average tree diameter, and elevation were the most important variables in 3 logistic regression models of WPBR presence and intensity. The models were tested on a randomly chosen portion of our data set. The model with 9 variables correctly predicted categories of low-, moderate-, and high-disease incidence in 79% of cases. The 2 models with fewer variables had lower predictive efficiencies but were more parsimonious and generally easy to measure. The ability to use easily measured or remotely sensed site and stand characteristics to predict WPBR spread or intensification could be an important asset to land managers who need to decide where to focus disease mitigation efforts and predict disease effects on water quality, wildlife habitat, recreation potential, and other land-management activities.     

Body fat, body water, and total caloric value of Uinta ground squirrels

The weight of body water and fat-free dry weight of Uinta ground squirrels ( Spermophilus armatus ) is given as a function of body weight. Body fat is presented as a function of body weight and body length. An equation for calculating the total caloric content of Uinta ground squirrels is given. Fat index (weight of fat/fat-free dry weight) values of juveniles increased from 0.11 to 0.22 from 5 June to 28 July. In male yearlings and adults the fat index increased about 8 to 9 times in the latter half of June and early July. &nbsp;&nbsp;&nbsp;